Input parameters:

  Query = CsaV3_5G010240 (Len=1107)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G010240, Len=1107):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFSKFFHKPVDQQSPSSSAPSPNAKKGVLTGTDLDPRVTLHYGIPPTASILAYDPMQSLLAVGTLDGRIKVLGGDNIEAI 80  
WD40-rpts      (__________________________________WD 1_________________________________)_______

Query       81 FTCPKSLPFKNLEFLHNQGFLVSISNDNEIQVWDLEHRQLVSTLQWESNITAFSVLFGTCYMYVGSEYAMVAVLKFDAEE 160 
WD40-rpts      ___________WD 2__________________)  (_________________WD 3________________)     

Query      161 RKIKQLPYYLTANVISDVIGVELPDQTSVVGVLLQPCSLGNRLLIAYENGLLVLWDASEDRAVIVRGHKDLELTEGNMTN 240 
WD40-rpts                     (__________________WD 4_________________)          (_____________

Query      241 PSTDVTDLELEKEISSLCWVAGDGSILAVGYVDGDILFWNFSNVTSSKDQQVNQSRNNVVKLQLSSSNRRLPVIILRWCP 320 
WD40-rpts      ___________WD 5________________________)                                        

Query      321 SELQNHKGTLFVYGGDEIGSPEVLTILSLDWSSGLKSLKCIGRLDLTLSGSFADIVLAPNVGETKRGISLFVLANPGQLH 400 
WD40-rpts                                                                                      

Query      401 VYDYAYLSGLMSQQEKLSSASGVQYPTMIPNIEPRVMVAKLGFIHREGKVFGALDAIVTTAKHHTKVPGDTTWPLTGGIP 480 
WD40-rpts                                                                 (____________________

Query      481 CQLRDAGDYQVERVFIAGYQDGSVRIWDATYPSFSPILYLEPEVIGLNIAGLSASISALDFCSVTLNIAVGNECGLVRLY 560 
WD40-rpts      __WD 6_____________________)        (____________________WD 7___________________

Query      561 KLVGSSEGASLHYVTETKNEVHNMHRGEGIQCVAVFSLVNSSVSTLSFENCGAILAVGFESGQVAVIDSNTLSLLYLTNE 640 
WD40-rpts      )                            (_________________WD 8________________)            

Query      641 LSNSRSPVISLAIKVFRETNHLEASSEESIPKISNPPRKGMLLVMTKKSDLAVLDSTNGELISFQSTNAKELTSISMYLI 720 
WD40-rpts                     (_________________WD 9_________________)                         

Query      721 DGDYLLPEAFSGTHAPSTPKISGESCSLPDNAHSGRTLHEVGAETSSGVVNAELTVANLFILLCCETALYLYPLKLTNEG 800 
WD40-rpts                                                                                      

Query      801 ENKFIQKVNLTRPCCWTTLLKKDGKVSGLAVLYQNGMIEIRSFQNLEELLWESSLASILRWNFKTNMDKTICSDDGQLML 880 
WD40-rpts                                                                                      

Query      881 LNGTEFAVVSLLIYENAFRIPESLSCLHDKVLAAAAEVWDNFYSSQNNHNATSSGIFDSVVKGFKGGKVGNDVDRFGLCK 960 
WD40-rpts                                                                                      

Query      961 LNDAHLESLYSYPPFLKPSKGVIDGQGVVELDIDDINIDEPLVVRFSPKASKNENEGKRSEKEKLFEGASTDSQPKMRTA 1040
WD40-rpts                                                                                      

Query     1041 EEIKAKYRKVGSASAAAEEARNKLLERQQKLDKLSERTEELKNGAENFADMAKELAKRMENRKWWQL 1107
WD40-rpts                                                                         

9 WD40-repeats found in QUERY=CsaV3_5G010240 (Len=1107):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-73       2.85  232.59  0.04473       22.5%     45.60
  WD 2:  Seg  4    73-114      5.73  351.18  0.00115       27.5%     57.18
  WD 3:  Seg  8   117-155      3.98  279.12  0.01073       20.0%     56.32
  WD 4:  Seg 13   176-216      4.38  295.44  0.00648       25.0%     49.56
  WD 5:  Seg 18   227-280      4.43  297.79  0.00603       25.0%     48.26
  WD 6:  Seg 33   460-508      5.75  352.28  0.00111       17.5%     29.75
  WD 7:  Seg 35   517-561      5.17  328.06  0.00236       12.5%     44.80
  WD 8:  Seg 40   590-628      6.60  387.28  0.00038       32.5%     58.25
  WD 9:  Seg 46   656-695      4.69  308.41  0.00434       15.0%     21.51

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-73     MFSKFFHKPVDQQSPSSSAPSPNAKKGVLTGTDLDPRVT-----LH--YGIPPT--------------ASILAYDP--MQSLLAVGTLDGRIKVLG
   WD 2   73-114    GGD---------------------------------NIE-----AIFTCPKSLP--------------FKNLEFLH--NQGFLVSISNDNEIQVWD
   WD 3  117-155    -HR---------------------------------QLV-----ST--LQWESN--------------ITAFSVLF--GTCYMYVGSEYAMVAVLK
   WD 4  176-216    -SD---------------------------------VIG-----VE--LPDQTS--------------VVGVLLQPCSLGNRLLIAYENGLLVLWD
   WD 5  227-280    GHK---------------------------------DLE-----LT--EGNMTNPSTDVTDLELEKEISSLCWVAG--DGSILAVGYVDGDILFWN
   WD 6  460-508    TAK------------------------HHTKVPGDTTWP-----LT--GGIPCQ--------------LRDAGDYQ--VERVFIAGYQDGSVRIWD
   WD 7  517-561    ILY---------------------------------LEPEVIGLNI--AGLSAS--------------ISALDFCS--VTLNIAVGNECGLVRLYK
   WD 8  590-628    -IQ---------------------------------CVA-----VF--SLVNSS--------------VSTLSFEN--CGAILAVGFESGQVAVID
   WD 9  656-695    FRE---------------------------------TNH-----LE--ASSEES--------------IPKISNPP--RKGMLLVMTKKSDLAVLD

   WD40 Template    TGE---------------------------------CLR-----TL--SGHTSG--------------VTSVSFSP--DGKRLVSGSEDGTIKVWD