WDRR: WD40 Repeat Recognition
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| JobID: SCP6R1659459587 Submitted: 2022-08-03 00:59:47 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79792430 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh01G004500 (Len=883) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh01G004500, Len=883): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSHARVWSKSSANAAFSRRTMILKWGFPSLALHQLTRTPMSAKCEGLGIVDVLSDGNCGGFPSFLPKEVGKIKDPFARTM 80
WD40-rpts
Query 81 ARKIERLPITLSETRLMSSCVKPVIRSKKSPVVLLHCFDSSCLEWSYAFPLLEEAGLETWAVDVLGWGFSDLDSLPPCNV 160
WD40-rpts
Query 161 QTKRSHLYQFWKSYIKRPMVLVGPSLGAAVALDFAVNHPEAVEKLVLINACVYSNCTGHPTKLPKVVAYAGVSLLKSIPL 240
WD40-rpts
Query 241 RLLANKLTFNELSLARNLEWTNVGRLHCLLPWWEDATVNFMYSGGYNVISLIKQVKHRALIIAGEDDRIIRYKDAVRLHC 320
WD40-rpts
Query 321 ELPNAIMRIITDSGHLPHVDSPASVSKLVTEFHLVCELLLLNLCNSGFCSLRFLLRFLDFEFAEVAMDMDGVSEDSSRRI 400
WD40-rpts
Query 401 QVRFITKLMAPCRVPTNAIAIPSNLTRLGLSTVVNNLLLAGNPEWEAEPFDFLIDGEFVRMSLEQFLLAKGISAEKVLEI 480
WD40-rpts (___________________WD 1_________________
Query 481 EYIKAVVPRREEEPSVHDDWVSAVDGSHSGFILTGCYDGLGRVWESSGLCTHILEGHKDAISSVCVVNPEEAASVTLATA 560
WD40-rpts _) (________________WD 2________________) (___________________WD 3_________
Query 561 SKDQTLRLWKYSKDDRDSNPTKIRPFKILKGHRLSVQSVASQKSGDLICSGSWDCTINLWQTDETHFEGNVSIKKRRKND 640
WD40-rpts _________) (_______________WD 4______________)
Query 641 QVEESQLEGDSVATLVGHTQCVSAVVWPQHGEIYSASWDHSIRRWDVETGKDLFNIFCGKALNCLDVGGEGSTLIAAGGS 720
WD40-rpts (________________WD 5________________) (_________________WD 6_________
Query 721 DPTVRIWDPRKPGTSSPIFQFLSHKSWISSCKWHDKSSFHLLSASYDGKVRLWDLRTAWPLAVIDSHKDKVLSADWWKGD 800
WD40-rpts _______) (_________________WD 7_________________) (________________WD 8__
Query 801 SVVSGGADSKLRISLGICVSKALMLQSLPHLVSSSLSFRSVFLLVFFGRAGARGSGVEIVNFTFLVRLVVKPNQTFILLK 880
WD40-rpts ______________) (___________________WD 9__________________)
Query 881 RAR 883
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh01G004500 (Len=883): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 14 440-482 4.08 283.25 0.00945 17.5% 33.13 WD 2: Seg 18 488-525 7.54 426.28 0.00011 27.5% 42.98 WD 3: Seg 21 528-570 8.53 466.89 3.2e-05 30.0% 55.50 WD 4: Seg 25 587-621 8.91 482.82 1.9e-05 35.0% 48.18 WD 5: Seg 29 649-686 7.79 436.48 8.2e-05 37.5% 52.79 WD 6: Seg 33 690-728 6.54 384.61 0.00041 22.5% 50.37 WD 7: Seg 37 735-774 7.95 443.13 6.6e-05 25.0% 55.35 WD 8: Seg 41 778-815 7.16 410.54 0.00018 22.5% 55.26 WD 9: Seg 45 819-861 4.42 297.07 0.00616 17.5% 35.72Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 440-482 AGNPEWEAEPFDFLIDGEFVRM----SLEQF-LL-----AKGISAEKVLEIEY WD 2 488-525 -P--RREEEPSVHDDWVSAVDG----SHSG--FI-----LTG-CYDGLGRVWE WD 3 528-570 -G--LCTHILEGHKDAISSVCVVNPEEAASV-TL-----ATA-SKDQTLRLWK WD 4 587-621 -------KILKGHRLSVQSVAS----QKSGD-LI-----CSG-SWDCTINLWQ WD 5 649-686 -G--DSVATLVGHTQCVSAVVW----PQHGE--I-----YSA-SWDHSIRRWD WD 6 690-728 -G--KDLFNIFCGKA-LNCLDV----GGEGS-TL----IAAG-GSDPTVRIWD WD 7 735-774 -S--SPIFQFLSHKSWISSCKW----HDKSSFHL-----LSA-SYDGKVRLWD WD 8 778-815 -A--WPLAVIDSHKDKVLSADW----W-KGD-SV-----VSG-GADSKLRISL WD 9 819-861 -V--SKALMLQSLPHLV-SSSL----SFRSV-FLLVFFGRAG-ARGSGVEIVN WD40 Template TG--ECLRTLSGHTSGVTSVSF----SPDGK-RL-----VSG-SEDGTIKVWD |
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