Input parameters:

  Query = CmaCh12G005050 (Len=391)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh12G005050, Len=391):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKFGNLLTDDDGDYPTPSSSDAADSWPTSDASPWNQTYPFMKSPCFPQLQNGVVHRNTSLIGSLVREEGHVYSLATAGEL 80  
WD40-rpts                                                               (________________WD 1__

Query       81 LYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGQKIFTGHQDGKIRVWTDGHRRAGTLPAMRDVLRSLINPQNYVVL 160 
WD40-rpts      _____________)(________________WD 2________________)                            

Query      161 GRNRSRLWFKHVDAVSSLSLGEDGAILYSCSWDRTMKVWRILDSKCLESIIVHDDAVNAIVAAPDGSVITGSADGSAKVW 240 
WD40-rpts          (_______________WD 3_______________)   (________________WD 4________________

Query      241 RRNHEVGDDATRHTLEQTLLKQDSAVTAVAVNAAGTVVYCGSSDGVVNFWEREKRLTYGGVLKGHNLAVLCLATAGNCMV 320 
WD40-rpts      )           (_________________WD 5________________)(__________________WD 6______

Query      321 LSGSADNNICVWRRDGLFHTCVTVLMGHTGPVKCLAVEEDLRPSKRGGRWWIAYSGSLDRSVKVWGVPDGY 391 
WD40-rpts      ____________)     (_____________________WD 7_____________________)     

7 WD40-repeats found in QUERY=CmaCh12G005050 (Len=391):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    58-94       7.14  409.64  0.00019       25.0%     49.96
  WD 2:  Seg  6    95-132      8.68  473.20  2.6e-05       22.5%     51.95
  WD 3:  Seg 13   165-200      8.70  474.16  2.5e-05       37.5%     52.22
  WD 4:  Seg 17   204-241      8.49  465.40  3.3e-05       35.0%     50.48
  WD 5:  Seg 21   253-291      8.88  481.44  2.0e-05       30.0%     55.54
  WD 6:  Seg 25   292-333      7.09  407.33  0.00020       30.0%     49.49
  WD 7:  Seg 29   339-386      7.91  441.47  7.0e-05       35.0%     51.81

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-94     -TSLI---GSLVREEGHVYS--LATAGEL---------LYTGSDSKNIRVWK
   WD 2   95-132    NLKEF---TGFKSSSGLVKAIIIS--GQK---------IFTGHQDGKIRVWT
   WD 3  165-200    ----S---RLWFKHVDAVSSLSLGEDGAI---------LYSCSWDRTMKVWR
   WD 4  204-241    -SKCL---ESIIVHDDAVNAIVAAPDGS----------VITGSADGSAKVWR
   WD 5  253-291    -HTLE---QTLLKQDSAVTAVAVNAAGTV---------VYCGSSDGVVNFWE
   WD 6  292-333    REKRLTYGGVLKGHNLAVLCLATAGNC-M---------VLSGSADNNICVWR
   WD 7  339-386    -HTCV---TVLMGHTGPVKCLAVEEDLRPSKRGGRWWIAYSGSLDRSVKVWG

   WD40 Template    TGECL---RTLSGHTSGVTSVSFSPDGKR---------LVSGSEDGTIKVWD