Input parameters:

  Query = CsaV3_1G028610 (Len=571)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G028610, Len=571):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPTVCKISYKFPNFPSPSPSALKPFPFSMASQALTDYERQRLENIRRNDEMLAALKLQSKASELSAASKRQRVETKSEKV 80  
WD40-rpts                                                                                      

Query       81 YPKTKPKKETPMVLRRSLRARGIPPDAKKLVDIDDLTESATKIRKSETKSMSSPRVLGPLEMVEVCSERESHPSLIESIL 160 
WD40-rpts                                                                                      

Query      161 GVLSKSLLSRSGKEELVDDVKEFKMGGRNGNFSNEVEIEGGGDGNCLKMDPIDNYSNLIKRVTEGLISDVKDPLLSSIKM 240 
WD40-rpts                                                 (_________________WD 1_______________

Query      241 EHKNDGSCLKPASLVLNADNIARVVPGRIMAVRFFPCLDSKMIVVGNKFGEVGFWNADHEGEEGNGVYLYHPHSGPISGI 320 
WD40-rpts      _)        (____________________WD 2____________________)       (________________

Query      321 SIQRHALSKVYTSCYDGFIRLMDVEKEMFDLVYRNEDTIFSLSQQSNDANCLYFSEGRGGLNIWDKRTGNCTMEWTLHED 400 
WD40-rpts      _WD 3_________________)   (_________________WD 4________________)   (___________

Query      401 RINSIDFNVGNSNIMATSSSDGTACIWDLRSVSDEKPQTLKTITHKKAIHSAYFSPSGRFLATTSFDDTVGIYGGVNFKD 480 
WD40-rpts      ______WD 5_________________)       (_________________WD 6________________)      

Query      481 TSLIPHDNQTGRWISSFRAIWGWDDSYIFIGNMKRAVDVISRAYRKRVFVLQSPKISAIPCRFDAHPYDVGTLAGATSGG 560 
WD40-rpts          (________________WD 7_______________)   (__________________WD 8_____________

Query      561 QVYMWTMSPDI 571 
WD40-rpts      _____)     

8 WD40-repeats found in QUERY=CsaV3_1G028610 (Len=571):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   204-242      4.24  289.89  0.00769       15.0%     28.91
  WD 2:  Seg  8   251-296      7.49  423.93  0.00012       22.5%     46.52
  WD 3:  Seg 12   304-343      7.70  432.72  9.2e-05       17.5%     55.73
  WD 4:  Seg 16   347-385      7.13  408.99  0.00019       15.0%     55.24
  WD 5:  Seg 20   389-428      8.68  473.12  2.6e-05       27.5%     55.45
  WD 6:  Seg 24   436-474      8.51  466.33  3.2e-05       25.0%     53.80
  WD 7:  Seg 29   485-521      6.68  390.46  0.00034       10.0%     38.95
  WD 8:  Seg 32   525-566      7.08  406.99  0.00020       15.0%     54.40

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  204-242    -G----NCLKMDPIDNYSNLIKRVT---E--GL-ISDVKDPLLSSIKMEH
   WD 2  251-296    PASLVLNADNIARVVPGRIMAVRFF---PCLDS-KMIVVGNKFGEVGFWN
   WD 3  304-343    -G----NGVYLYHPHSGPISGISIQ---R--HALSKVYTSCYDGFIRLMD
   WD 4  347-385    -E----MFDLVYRNEDTIFSLSQQS---N--DA-NCLYFSEGRGGLNIWD
   WD 5  389-428    -G----NCTMEWTLHEDRINSIDFN---V-GNS-NIMATSSSDGTACIWD
   WD 6  436-474    -K----PQTLKTITHKKAIHSAYFS---P--SG-RFLATTSFDDTVGIYG
   WD 7  485-521    PH----D---NQTGRWISSFRAIWG---W--DD-SYIFIGNMKRAVDVIS
   WD 8  525-566    -R----KRVFVLQSPKISAIPCRFDAHPY--DV-GTLAGATSGGQVYMWT

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFS---P--DG-KRLVSGSEDGTIKVWD