Input parameters:

  Query = CmaCh06G004710 (Len=404)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh06G004710, Len=404):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRRHVEERTRGGAYLSLRRPLKSSSRISGCVELGLDNLPALPAIWERNTILVMELWDGRFELKETAKLEGHTDRVWSL 80  
WD40-rpts      (___________________________WD 1__________________________)    (________________

Query       81 AWNPATGTEGIPLVFASCSGDKTVRIWEQSPSSGSWNCKAVLEETHTRTVRSCSWSPNGKLLATASFDATTAMWENIGGD 160 
WD40-rpts      ____WD 2___________________)(_____________________WD 3____________________)     

Query      161 YECVSTLEGHENEVKSVSWNASGSLLATCSRDRTVWIWEVLPGNEYECVSVLQGHTQDVKMVQWHPTLDLLFSCSYDNTI 240 
WD40-rpts      (_________________WD 4________________)      (_________________WD 5_____________

Query      241 KVWAGDDDNDDWRCVQTIDESNNGHSSTVWALSFNATGDKMVTCSDDLTLKIWETDETRLHSGDGYSPWRHTCTLSGNHD 320 
WD40-rpts      ___)             (________________WD 6_______________)                     (____

Query      321 RTIFSVHWSRNGIIASGAADDAIRLFVENQEKMVDGSSFQLLYKKEKAHNMDVNSVQWSPGEKRLLASASDDGTIKIWEL 400 
WD40-rpts      _________WD 7_____________)(_______________________WD 8_______________________) 

Query      401 VSVS 404 
WD40-rpts          

8 WD40-repeats found in QUERY=CmaCh06G004710 (Len=404):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-59       6.25  372.68  0.00059       17.5%     39.28
  WD 2:  Seg  5    64-108      7.57  427.50  0.00011       30.0%     50.79
  WD 3:  Seg  9   109-155      8.50  465.69  3.3e-05       35.0%     48.41
  WD 4:  Seg 13   161-199      9.98  526.77  4.9e-06       40.0%     52.05
  WD 5:  Seg 17   206-244      9.71  515.68  7.0e-06       45.0%     51.91
  WD 6:  Seg 22   258-294      9.32  499.62  1.1e-05       32.5%     43.92
  WD 7:  Seg 26   316-347      6.24  372.36  0.00060       25.0%     47.31
  WD 8:  Seg 29   348-399      8.05  447.26  5.8e-05       37.5%     50.11

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-59     MGRRRHVEERTRGGAYLSL-------RRPLKSSSRISGCVELGL-DNLP------ALPAIWERNTILVMELWD
   WD 2   64-108    -LK---------------E-------TAKLEGHTDRVWSLAWNP-ATGTEGIPLVFASCSGDK----TVRIWE
   WD 3  109-155    QSP---------------SSGSWNCKAVLEETHTRTVRSCSWSP-NGKL------LATASFDA----TTAMWE
   WD 4  161-199    -YE---------------C-------VSTLEGHENEVKSVSWNA-SGSL------LATCSRDR----TVWIWE
   WD 5  206-244    -YE---------------C-------VSVLQGHTQDVKMVQWHP-TLDL------LFSCSYDN----TIKVWA
   WD 6  258-294    ------------------I-------DESNNGHSSTVWALSFNA-TGDK------MVTCSDDL----TLKIWE
   WD 7  316-347    SG-----------------------------NHDRTIFSVHWSR-NG-I------IASGAADD----AIRLFV
   WD 8  348-399    ENQ----EKMVDGSSFQLL-------YKKEKAHNMDVNSVQWSPGEKRL------LASASDDG----TIKIWE

   WD40 Template    TGE---------------C-------LRTLSGHTSGVTSVSFSP-DGKR------LVSGSEDG----TIKVWD