Input parameters:

  Query = CsaV3_4G036640 (Len=674)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G036640, Len=674):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEELIANFVSAYLKKKGFKETEQAFQEELRQNKTNSSSPSSFIDVDVAKHLLSFSEAENIPAKYLEGYSKLRSWAYNSL 80  
WD40-rpts                                                                                      

Query       81 DLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFREDHEMMHLRDIQKLEGVLSPSHLEEMEFAHSLRQGKVNIKI 160 
WD40-rpts                                                                                      

Query      161 CQYSYEMLLQYLHKTQTTVILGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERLEK 240 
WD40-rpts                                                                                      

Query      241 AAGLLSDSEKAEGETKDGDVDENKKRTAEGGKQGGSIKKVKKDKTASATGKTLRAEANSASMAPRVKPELALPIISTEVE 320 
WD40-rpts                                                                                      

Query      321 ESILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISYDGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTS 400 
WD40-rpts                         (_________________WD 1________________)                      

Query      401 DPVTGHTSGKRPYTLFQGHSGPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASC 480 
WD40-rpts                   (_______________WD 2______________)   (_________________WD 3_______

Query      481 SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRF 560 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      561 MASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEGSLLASGSADCTVKLWDVTSSTKPPRTDENKTGTPNRLRSL 640 
WD40-rpts      _____________)   (_________________WD 6________________)                        

Query      641 KTLPTKSTPVYSLRFSRRNLLFAAGALSKNASTA 674 
WD40-rpts                                        

6 WD40-repeats found in QUERY=CsaV3_4G036640 (Len=674):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   340-378      7.94  442.72  6.7e-05       30.0%     58.62
  WD 2:  Seg  7   414-448      8.91  482.65  1.9e-05       37.5%     46.84
  WD 3:  Seg 10   452-490      9.27  497.60  1.2e-05       35.0%     54.64
  WD 4:  Seg 14   494-532      9.49  506.61  9.2e-06       32.5%     54.61
  WD 5:  Seg 18   536-574     10.96  567.47  1.4e-06       52.5%     54.65
  WD 6:  Seg 22   578-616     10.77  559.64  1.8e-06       50.0%     57.21

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  340-378    -SVSFYTFINTHNGLNCSSISYDGALVAGGFSDSSLKVWD
   WD 2  414-448    T-----LFQGHSGPVHSATFSPIGDFVLSSSADTTIRLWS
   WD 3  452-490    -NANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWS
   WD 4  494-532    -IQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWD
   WD 5  536-574    -GECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWD
   WD 6  578-616    -GRCVTPLIGHTSCVWTLAFSCEGSLLASGSADCTVKLWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD