Input parameters:

  Query = CmaCh04G004520 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G004520, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAVPSPATGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASDNVLRGEFVHGGPVLDCCFHDDSSGFSVSVDN 80  
WD40-rpts                 (_______________WD 1______________)(_________________WD 2____________

Query       81 TVRRLVFNHNKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVV 160 
WD40-rpts      _____)  (_________________WD 3________________)     (_________________WD 4______

Query      161 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRSVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKLEAGRD 240 
WD40-rpts      __________)     (_________________WD 5________________)                (________

Query      241 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKSHEPDAIY 320 
WD40-rpts      _________WD 6________________)   (_________________WD 7________________)        

Query      321 VRSVNEIEVKPKPKVYPNPPT 341 
WD40-rpts                           

7 WD40-repeats found in QUERY=CmaCh04G004520 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-46       7.91  441.34  7.0e-05       20.0%     51.40
  WD 2:  Seg  4    47-86       6.06  365.01  0.00075       25.0%     57.53
  WD 3:  Seg  8    89-127      9.06  489.08  1.6e-05       32.5%     52.61
  WD 4:  Seg 12   133-171      8.18  452.49  5.0e-05       22.5%     56.36
  WD 5:  Seg 16   177-215      7.52  425.46  0.00011       20.0%     55.87
  WD 6:  Seg 20   232-270      8.09  448.69  5.6e-05       25.0%     47.20
  WD 7:  Seg 24   274-312      8.12  450.20  5.3e-05       22.5%     48.08

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-46     ------ELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYD
   WD 2   47-86     ASDNVLRGEFVHGGPVLDCCFHDDSSGF-SVSVDNTVRRLV
   WD 3   89-127    -HN-KEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWD
   WD 4  133-171    -GQ-EHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD
   WD 5  177-215    -QP-EQRRESSLKYQTRSVRCYPNGTGYALSSVEGRVAMEF
   WD 6  232-270    -HR-KLEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD
   WD 7  274-312    -KK-RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDK

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD