Input parameters:
Query = PF3D7_0215400 (Len=972)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (PF3D7_0215400, Len=972):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSDKQSKKNKNSKKNKNNKSDKNDINSKNKKNNDNNKTNDNYCNQVIDNTNDEVIETPEQNDNIKKENPSSNNNNNNNKD 80
WD40-rpts
Query 81 DAICNNNKDDTICNNKDDTICNNNKDDTICNNKDDTICNNNKDDIICNNKDDTMCNNKDDTICNNKDDTICNNKDDIICN 160
WD40-rpts
Query 161 NKDDIICNNNDDTICNNKDDTICNNNDDTICNNNDDTICNNNDDTICNNNDDTICNNKDDLMNDKNEKPLNNGDKEDPLN 240
WD40-rpts
Query 241 NNESNNMDKNKNDEEGSSCLSSLQNEGVDINQTKDYKEKKRVSDASDIYARTDSVNSNLIKISQSSEEWEPQNKWTLSVL 320
WD40-rpts
Query 321 FQNIKSIVVKNYIFVAKKCGIPNQPNKPGPVLAISIEKANNNDSDNIIVQTPCAYEKYSLRGKLIQHKSLYPCTITCMMN 400
WD40-rpts
Query 401 GSIGGIGKVVILGEQNGNVLIYKIDKFECILKLNTKECLKKYFNNNPTTRRKSINNYMDFKEKVVNYYHHPSNDKEQQKQ 480
WD40-rpts
Query 481 STQYNHNKHNNNFINNLDPSQTNHNNPYDDNDLSYQISGISVKSTFANFIHWIIAGNMKGYIFVWEVPSGNIIKILLPPL 560
WD40-rpts
Query 561 YFFNEAKRKKKKKKKKKRKNYNNPNYPYSSSSSSSSSSSSSSSSSSFSSSSVSSYYSDDFYYASNGEKKKKKKKRKKKKT 640
WD40-rpts
Query 641 NTNKNKNKNININEIKKNTNEVQNQNKQNYNGTQNNLSISHDTPNSINVNEKLEKREEVNKQNNGFTNSNEQNSTYNSDD 720
WD40-rpts
Query 721 NSYNNSDESSDDNSDYCSDDLYSDEYSESDTSPNNSTNESYDTNSIHNKRKKNKKNTYNDISNKCYVSAILAVTHKYELW 800
WD40-rpts
Query 801 VAFGNGYIAVYDLYDFQLLLYTCISKSPIMDLKYSKILEDVLILIGNNYLSVWDTKTLKQVRKIPTSQITSKNSSLSTIY 880
WD40-rpts
Query 881 LLESPNSWKYKQVVLIAGCNNGSVCLTNITKKVDGDLTFSYIKTYNKHFEPYVPISYIYIEPTINAAFVGDASGVVFTLP 960
WD40-rpts
Query 961 RILSTLKNNDSS 972
WD40-rpts
No WD40-repeats found in QUERY=PF3D7_0215400 (Len=972)!