Input parameters:

  Query = CmaCh05G009890 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh05G009890, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSVASAMQGGSSGIGYGLKYQARCIADVIADTDHTSFITGTLSLKDENEVHLIRISSSGSELICEGLFSHPNEIWDLAS 80  
WD40-rpts                  (___________________WD 1__________________) (_____________________WD

Query       81 CPFDQRIFSTVFSTGENFGAAIWQIPELYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCS 160 
WD40-rpts       2_____________________)            (_________________WD 3_________________)    

Query      161 RKIAQVQSKESAGLLHYLSGGTWDPHDSNAIAATSESSVQFWDLRTMKKSDSIACSAYVRNVDYNPKKKHLLVTAEDETG 240 
WD40-rpts             (_______________WD 4_______________)(__________________WD 5______________

Query      241 ISIWDLRKPKVPIQQLPGHTHWTCAVRCNPEFEGLILSAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDY 320 
WD40-rpts      ____)(___________________WD 6___________________)                     (_________

Query      321 EDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR 357 
WD40-rpts      ________WD 7_________________)       

7 WD40-repeats found in QUERY=CmaCh05G009890 (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-55       6.11  367.17  0.00070       10.0%     52.02
  WD 2:  Seg  6    57-104      6.32  375.92  0.00053       17.5%     46.98
  WD 3:  Seg 10   117-156      6.81  396.00  0.00029       22.5%     49.88
  WD 4:  Seg 15   168-203      7.66  431.22  9.6e-05       10.0%     47.75
  WD 5:  Seg 18   204-245      6.54  384.64  0.00041       25.0%     49.49
  WD 6:  Seg 22   246-289      7.50  424.61  0.00012       22.5%     52.53
  WD 7:  Seg 26   311-350      6.01  362.97  0.00080       22.5%     55.44

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-55     -SG----IGYGLK-YQARCIADVIADT-DHT-S-F----ITGTLSLKDENEVHLIR
   WD 2   57-104    SSSGSELICEGLF-SHPNEIWDLASCP-FDQ-R-IFSTVFSTG----ENFGAAIWQ
   WD 3  117-156    -LE----RVTSLD-EHASKINCVLWWP-SGR-HDK----LISI----DEENILLWS
   WD 4  168-203    --------SKESA-GLLHYLSGGTWDP-HDS-N-A----IAAT----SESSVQFWD
   WD 5  204-245    LRT----MKKSDSIACSAYVRNVDYNP-KKK-HLL----VTAE----DETGISIWD
   WD 6  246-289    LRK-PKVPIQQLP-GHTHWTCAVRCNP-EFEGL-I----LSAG----TDSAVNLWL
   WD 7  311-350    -DP----LLHSYS-DYEDSVYGLAWSSREPW-I-F----ASLS----YDGRVVVES

   WD40 Template    TGE----CLRTLS-GHTSGVTSVSFSP-DGK-R-L----VSGS----EDGTIKVWD