WDRR: WD40 Repeat Recognition
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| JobID: RU9711352450330 Submitted: 2012-11-09 16:38:50 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 386801945 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = PF3D7_1105200 (Len=463) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (PF3D7_1105200, Len=463): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MCCTFWGLRLDNTCNNMKSVDIIKCDMCFFSHDGLFLIYTIINKIFVIQVKNLEMYRIYVESYKVDDIKLSSDNIHFLTL 80
WD40-rpts (________________WD 1________________)(__________________WD 2_______
Query 81 IKNKGCVCIYSFYKNNLINKICDYFQTYDHSFFLSKHNNIGIVKYEKKCLTIYNMNNPEKCLINIENIKYQNKGYCSNYI 160
WD40-rpts __________) (_________________WD 3_________________) (_________________WD 4
Query 161 NTIFACLVENKKDVNILLLSLFNYTIIKIIKCINFFPNDILFSKSDHIIAYSNKNRSLHIYSIDGDLLHVYKYAEDLGGI 240
WD40-rpts ________________) (_________________WD 5________________)(_________________
Query 241 NIVSINKMKNTLALGLENGYVKILCLENFKEIKFFFLDNTLQMNDKLNIYKENISSKNHINDILSTNIKSKRKKNEHFSF 320
WD40-rpts __WD 6__________________) (____________________WD 7_____________
Query 321 YTNVSEGIKEGEYKLKREKGSVEVATKIGITFLSFSICGNYLSVLNEIHNNVVRIYETKNYSCIAILQQKNKVTFIQWDN 400
WD40-rpts _______) (_____________________WD 8____________________) (__________________WD
Query 401 ILYKPRLLICTCTCYLFMWLPFECAVIKISNDFVCKEAEWNNDGTLLLTKNDNSLALFYPRKK 463
WD40-rpts 9_________________)(_________________WD10_________________)
 10 WD40-repeats found in QUERY=PF3D7_1105200 (Len=463): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 13-50 5.34 335.06 0.00190 20.0% 36.21 WD 2: Seg 5 51-91 6.79 395.07 0.00029 10.0% 51.68 WD 3: Seg 9 95-134 5.22 330.35 0.00220 5.0% 55.46 WD 4: Seg 13 139-177 5.21 329.82 0.00223 7.5% 51.67 WD 5: Seg 16 184-222 6.60 387.13 0.00038 5.0% 38.08 WD 6: Seg 20 223-265 6.94 401.40 0.00024 22.5% 54.35 WD 7: Seg 26 283-328 5.95 360.38 0.00087 12.5% 28.06 WD 8: Seg 29 331-377 6.22 371.42 0.00061 25.0% 49.03 WD 9: Seg 33 380-420 5.24 331.16 0.00214 12.5% 51.31 WD10: Seg 37 421-460 7.28 415.55 0.00016 12.5% 52.15Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 13-50 T--CN---N------MKSV-----DIIKCDMCFFSHDGL--FL-IYTIIN--KIFVIQV WD 2 51-91 KNLEM---Y------RIYV-----ESYKVDDIKLSSDNI--HF-LTLIKN-KGCVCIYS WD 3 95-134 -NNLI---N------KICD-----YFQTYDHSFFLSKHN--NIGIVKYEK--KCLTIYN WD 4 139-177 -EKCL---I------NIEN-----IKYQNKGYCSNYINT--IF-ACLVEN--KKDVNIL WD 5 184-222 -YTII---K------IIKC-----INFFPNDILFSKSDH--II-AYSNKN--RSLHIYS WD 6 223-265 IDGDLLHVY------KYAE-----DLGGINIVSINKMKN--TL-ALGLEN--GYVKILC WD 7 283-328 MNDKL---NIYKENISSKN-----HINDILSTNIKSKRK--KN-EHFSFY--TNVSEGI WD 8 331-377 GEYKL---K------REKGSVEVATKIGITFLSFSICGN--YL-SVLNEIHNNVVRIYE WD 9 380-420 -NYSC---I------AILQ-----QKNKVTFIQWDNILYKPRL-LICTCT--CYLFMWL WD10 421-460 PFECA---V------IKIS-----NDFVCKEAEWNNDGT--LL-LTKNDN--SLALFYP WD40 Template TGECL---R------TLSG-----HTSGVTSVSFSPDGK--RL-VSGSED--GTIKVWD |
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