Input parameters:

  Query = Rigde15640_c0_g1_i1_1353_2831 (Len=338)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (Rigde15640_c0_g1_i1_1353_2831, Len=338):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENAGKDSCSRSEYSVSYDSPHPLYAMAISSAHSQSRIALGSFIEEHSNRVDILSFDPDSLSIKANPSLSFEHPYPPTKL 80  
WD40-rpts                                                              (_______________________

Query       81 MFNPNSLSSLRRSSDLLASSGDYLRLWEVGDSSIEPLSVLNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIE 160 
WD40-rpts      WD 1_______________________)            (________________WD 2________________)  

Query      161 KSVVETQFIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN 240 
WD40-rpts       (________________WD 3________________)      (__________________WD 4____________

Query      241 KVVILDIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSMYSAAHEINQLQWSAA 320 
WD40-rpts      _____)    (_________________WD 5_________________)        (_________________WD 6

Query      321 QPDWIAIAFSNKMQLLKV 338 
WD40-rpts      ________________) 

6 WD40-repeats found in QUERY=Rigde15640_c0_g1_i1_1353_2831 (Len=338):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    57-108      5.02  321.92  0.00285       20.0%     28.54
  WD 2:  Seg 10   121-158      6.78  394.89  0.00030       25.0%     44.85
  WD 3:  Seg 13   162-199      6.95  401.78  0.00024       17.5%     54.42
  WD 4:  Seg 17   206-246      4.44  298.17  0.00596        7.5%     53.25
  WD 5:  Seg 21   251-290      7.57  427.50  0.00011       20.0%     49.54
  WD 6:  Seg 25   299-337      5.34  335.10  0.00190        5.0%     44.12

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   57-108    DPDSLSIKANPSLSFEHPYPPTKLMFNP-NSLSSLRRSSDLLASSGDYLRLWE
   WD 2  121-158    NNS---KTSE------FCAPLTSFDWNEVEPKRIGTSSID------TTCTIWD
   WD 3  162-199    -SVVETQFIA------HDKEVYDIAWG--EARVFASVSAD------GSVRIFD
   WD 4  206-246    -STIIYESPQ------PDTPLLRLAWNKQDLRYMATILMD-----SNKVVILD
   WD 5  251-290    -SVPVAELER------HHSSVNAIAWAPRSCRHICSAGDD------KQALIWE
   WD 6  299-337    -GIDPMSMYS------AAHEINQLQWSA-AQPDWIAIAFS------NKMQLLK

   WD40 Template    TGECLRTLSG------HTSGVTSVSFSP-DGKRLVSGSED------GTIKVWD