Input parameters:

  Query = CsaV3_7G010210 (Len=757)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_7G010210, Len=757):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METGHSGYKLRCELTGHEDDVRGICVCGNEGIATSSRDKTVRFWNSDGRKYVESKILLGHTSFVGPLAWISPDEEFPEGG 80  
WD40-rpts            (_________________WD 1________________)(______________________WD 2________

Query       81 IVSGGMDTLVIVWDLRTGEKVQTLKGHQQQVTGITLDNGDIVSSSVDCTLRRWRNGQVLEFWGAHNAAIQSVIKLPSGVL 160 
WD40-rpts      _____________)   (________________WD 3_______________)(_________________WD 4____

Query      161 VTGSSDASLKLWRGKTCLKTLLGHTDTVRSLSVMSDLGVLSASHDGSIRLWALSGETLMEMVGHTSIVYSVDSHASGLIV 240 
WD40-rpts      ____________) (________________WD 5________________)  (________________WD 6_____

Query      241 SGSEDCSAKIWKDGICVQSIEHPGCVWDAKFLENGDIVTACSDGVVRVWTAEQERIADPQELESFASRLSQYKLKRKRVG 320 
WD40-rpts      ___________)(________________WD 7________________)                              

Query      321 GLKLEELPGMDALQIPGTSNGQTKVIREGDNGVAYSWNLKDYKWDKIGEVVDGPDDGGRKPVLDGVEYDYVFDVDIGDGE 400 
WD40-rpts                                                                                      

Query      401 PIRKLPYNLAEDPYTAADKWLLKEDLPLVYRQQVVDFILQNSGKKNFVPDPSFRDPYTGSSAYVPGGPSNVSAESRKPIF 480 
WD40-rpts                                                                                      

Query      481 KHIPKKGVLVFDVAQFDGILKKIVEFNNALLADSEKKNYALPELEVSRLSAIVKILKDTSHYHSTKFADADVVLLLNLLR 560 
WD40-rpts                                                                                      

Query      561 SWPRESLFPVIDMLRMIVLHPDGAILLLKFIDSDGILLELIQKVTMAPVIAANLLTSIRLIANLFKNSGYYNWLQKHRSE 640 
WD40-rpts                                                                                      

Query      641 ILDAFSSCYSSANKAVQLSFSTLILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIK 720 
WD40-rpts                                                                                      

Query      721 RTALDFDVESIAQKAKISKDAKIAEVGADIELLTKER 757 
WD40-rpts                                           

7 WD40-repeats found in QUERY=CsaV3_7G010210 (Len=757):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-45       6.35  376.96  0.00052       20.0%     52.71
  WD 2:  Seg  5    46-94       5.22  330.17  0.00221       32.5%     54.09
  WD 3:  Seg  9    98-134      7.34  417.84  0.00015       37.5%     52.38
  WD 4:  Seg 13   135-173      9.08  489.54  1.6e-05       35.0%     50.17
  WD 5:  Seg 16   175-212      7.25  414.06  0.00016       42.5%     47.29
  WD 6:  Seg 20   215-252      8.41  461.97  3.7e-05       47.5%     56.04
  WD 7:  Seg 24   253-290      6.78  394.85  0.00030       27.5%     55.29

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-45     GY----KLRCELTGHEDDVRGICVCG-----NE-GIATSSRDKTVRFWN
   WD 2   46-94     SDGRKYVESKILLGHTSFVGPLAWISPDEEFPEGGIVSGGMDTLVIVWD
   WD 3   98-134    -G----EKVQTLKGHQQQVTGITL-------DNGDIVSSSVDCTLRRWR
   WD 4  135-173    NG----QVLEFWGAHNAAIQSVIKLP-----SGV-LVTGSSDASLKLWR
   WD 5  175-212    -K----TCLKTLLGHTDTVRSLSVMS-----DLG-VLSASHDGSIRLWA
   WD 6  215-252    -G----ETLMEMVGHTSIVYSVDSHA-----SG-LIVSGSEDCSAKIWK
   WD 7  253-290    DG----ICVQSI-EHPGCVWDAKFLE-----NGD-IVTACSDGVVRVWT

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSP-----DGKRLVSGSEDGTIKVWD