Input parameters:

  Query = CsaV3_2G033060 (Len=513)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G033060, Len=513):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVSQLKLPRNKLEDLYEQ 80  
WD40-rpts                                                                                      

Query       81 IVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLEHLLVRTYFDPNEAYQDSTKEKRRAQIAQALAAEVTVVAPSR 160 
WD40-rpts                                                                          (___________

Query      161 LMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDVYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSVDGFIEV 240 
WD40-rpts      ____________WD 1______________________)(___________________WD 2_________________

Query      241 WDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSVVFSRDGT 320 
WD40-rpts      _)           (_________________WD 3________________)   (_________________WD 4___

Query      321 QLLSTSFDTTARIHGLKSGKLLKEFRGHSSYVNDAVFTNDGARVITASSDCTVKVWDVKTTDCLHTFKPPPPLRGGDASV 400 
WD40-rpts      ______________)   (_________________WD 5________________)         (_____________

Query      401 NSVHIFPKNADHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACLSPKGEWIYCIGEDRNMYCFSHQSGKLEHLM 480 
WD40-rpts      ____WD 6_________________)     (_________________WD 7________________)   (______

Query      481 KVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 513 
WD40-rpts      ___________WD 8________________) 

8 WD40-repeats found in QUERY=CsaV3_2G033060 (Len=513):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   149-199      3.92  276.51  0.01163       17.5%     41.44
  WD 2:  Seg  6   200-242      8.72  474.72  2.5e-05       42.5%     51.82
  WD 3:  Seg 11   254-292      9.64  512.92  7.6e-06       40.0%     46.54
  WD 4:  Seg 14   296-335      9.27  497.45  1.2e-05       50.0%     53.17
  WD 5:  Seg 18   339-377     10.62  553.33  2.2e-06       42.5%     56.47
  WD 6:  Seg 23   387-426      6.66  389.97  0.00035       20.0%     36.08
  WD 7:  Seg 26   432-470      6.96  402.19  0.00024       12.5%     49.80
  WD 8:  Seg 30   474-512      9.35  500.91  1.1e-05       30.0%     52.20

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  149-199    LAA---EV-TVV-APSRLMALIGQALKWQQHQGLLP-PGTQFDLFRGTAAMKQDVED
   WD 2  200-242    VYPTTLSHTIKF-GT----------KSHAECARFSP-DGQF--LVSCSVDGFIEVWD
   WD 3  254-292    -YQ---ADETFM-MH----------DDPVLCVDFSR-DSEM--IASGSQDGKIKVWR
   WD 4  296-335    -GQ---CLRRLERAH----------SQGVTSVVFSR-DGTQ--LLSTSFDTTARIHG
   WD 5  339-377    -GK---LLKEFR-GH----------SSYVNDAVFTN-DGAR--VITASSDCTVKVWD
   WD 6  387-426    -FK---PPPPLR-GG----------DASVNSVHIFPKNADH--IVVCNKTSSIYIMT
   WD 7  432-470    -VK---SFSSGK-RE----------GGDFVAACLSP-KGEW--IYCIGEDRNMYCFS
   WD 8  474-512    -GK---LEHLMK-VH----------EKDVIGVSHHP-HRNL--VATYSEDSTMKLWK

   WD40 Template    TGE---CLRTLS-GH----------TSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD