Input parameters:

  Query = CsaV3_5G001220 (Len=455)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G001220, Len=455):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAGSLNSSSSKSNNTRFPLQEQQLQKKHSKENLDRFIPNRSAMDFDYAHYMVTEGMKGKENPSVSSPSKEAYQKRLAET 80  
WD40-rpts                                                                                      

Query       81 LNMNRTRILAFKNKPPAPVELIPKEFFSSVSHDKPVKARRHIPQTSEKTLDAPDLVDDYYLNLLDWGSTNVLAIALGNSV 160 
WD40-rpts       (_________________WD 1________________)   (__________________WD 2______________

Query      161 YLWNGQDGSTSELVTVDDEVGPVTSVNWAPDGRHVAVGLNNSEVQLWDSLSNRQLRTLRGGHRMRVGSLAWNNHILTTGG 240 
WD40-rpts      ___)(___________________WD 3___________________)   (________________WD 4________

Query      241 MDGKIINNDVRIRDHIVETYRGHDQEVCGLKWSLSGQQLASGGNDNVLHIWDKATASSNSATQWLHRLEDHTSAVKALAW 320 
WD40-rpts      ________)    (_________________WD 5________________)             (______________

Query      321 CPFQGNLLASGGGSGDRSIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFAQNQLTLWKYPSMVKMGELTGHT 400 
WD40-rpts      __WD 6________________)   (_________________WD 7_________________)   (__________

Query      401 SRVLFMAQSPDGCTVASAAADETLRLWHVFGAPEVAKPTPKSYNTEPFAHINRIR 455 
WD40-rpts      _______WD 8________________)                           

8 WD40-repeats found in QUERY=CsaV3_5G001220 (Len=455):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    82-120      6.42  379.99  0.00047       20.0%     22.66
  WD 2:  Seg  5   124-164      4.86  315.49  0.00348        7.5%     51.80
  WD 3:  Seg  9   165-208      8.76  476.69  2.3e-05       30.0%     58.40
  WD 4:  Seg 13   212-249      5.30  333.76  0.00198       30.0%     51.35
  WD 5:  Seg 17   254-292      9.48  506.39  9.3e-06       30.0%     54.48
  WD 6:  Seg 21   306-343      6.12  367.26  0.00070       37.5%     40.09
  WD 7:  Seg 24   347-386      5.91  358.61  0.00091       17.5%     50.05
  WD 8:  Seg 28   390-428      9.54  508.81  8.6e-06       35.0%     57.55

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   82-120    NMN----RTRILAFK--NKPPAPVELIP-K-EFFSS--VSHDKPVKARR
   WD 2  124-164    -QT----SEKTLDAPDLVDDYYLNLLDW-GSTNVLA--IALGNSVYLWN
   WD 3  165-208    GQDGSTSELVTVDDE--VGPVTSVNWAP-DGRHVAV--GLNNSEVQLWD
   WD 4  212-249    -NR----QLRTLRGG--HR-MRVGSLAW-NNHILTT--GGMDGKIINND
   WD 5  254-292    -DH----IVETYRGH--DQEVCGLKWSL-SGQQLAS--GGNDNVLHIWD
   WD 6  306-343    ---------HRLEDH--TSAVKALAWCPFQGNLLASGGGSGDRSIKFWN
   WD 7  347-386    -GA----CLNSVDTG--SQVCALLWNKN-ERELLSS-HGFAQNQLTLWK
   WD 8  390-428    -MV----KMGELTGH--TSRVLFMAQSP-DGCTVAS--AAADETLRLWH

   WD40 Template    TGE----CLRTLSGH--TSGVTSVSFSP-DGKRLVS--GSEDGTIKVWD