Input parameters:

  Query = sp_Q6CY34_EIF3B_KLULA (Len=732)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q6CY34_EIF3B_KLULA, Len=732):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTLESLKIEDIPVDDIDFSDLEREFQIQDGGVNFDNFLVVDGAPVAPEAKVPVLEKVLTKLFSQAGKVLDMQIPVEDGK 80  
WD40-rpts                                                                                      

Query       81 TKGHLFIEMESVSAAKEAIQLFNGKKLDAKHRLLVNSLNDMEKYGSDDFESQSHEPVVPDFAPTDFLRSWLQNQDGRDQF 160 
WD40-rpts                                                                                      

Query      161 VLQKGDMTRVFWNRLAHQPDGVGEARKNWSNDVVKFSPKGTYLLSFHDQGVTSWGGPNFDRLKRFFHPDVSRLDVSPTEK 240 
WD40-rpts                  (___________________WD 1__________________)(_________________WD 2___

Query      241 FLITFSMNPIKPGEDTPFGPESEGHQICVWDLATGFLMKTFGIPPNAKLQWPLIRFSYDDKYCGRLGPNALAIYDIENNF 320 
WD40-rpts      ______________)                                                            (____

Query      321 QLLDGKLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWTPETNNQSCKAFLMTLPNKRIVKTVNLVQVSNVSIHWHE 400 
WD40-rpts      _________________WD 3____________________)                                      

Query      401 QADFVCFQVDRHTKSKKTFFTNLEICKLNESEIPVEKIEMKDRVLELAWEPKGTRFVTISKMDNGGEENPMYPKNFVKFF 480 
WD40-rpts                                    (_________________WD 4________________)           

Query      481 APEKKDNKDKDLAVLPDQLKWKLVKTVDQQFANCISWSPAGRFVAVCTIVNGKEIKKASLDFYDFDFTGEKTLNEVQDVK 560 
WD40-rpts                                                                                      

Query      561 ASLQAVAHIDNQFFTDLEWDSSGRFLTAWSSYSKHKLENGYTIYNCCGEAVRKEIVDQFRNFVWRPRPESLLSNAEKKKA 640 
WD40-rpts                                                                                      

Query      641 RKNLKQWSVKFEEQDAMESDSALRDLILKRRAELSAWVSYREQSKERLESEDSYTIFDNFESDKADETQYVTVEEVKEEI 720 
WD40-rpts                                                                                      

Query      721 LEETQEEVESFE 732 
WD40-rpts                  

4 WD40-repeats found in QUERY=sp_Q6CY34_EIF3B_KLULA (Len=732):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   173-215      2.88  233.78  0.04315       22.5%     31.36
  WD 2:  Seg 10   216-255      4.31  292.53  0.00709       20.0%     29.30
  WD 3:  Seg 18   316-362      3.17  245.63  0.03007       22.5%     31.66
  WD 4:  Seg 27   431-469      3.53  260.53  0.01904       17.5%     29.92

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  173-215    NRLAHQPDGVGEAR---KNWSNDVVKFSPKGTYLLS----FHDQG-VTSWG
   WD 2  216-255    GPNFDRLK----RF---FHPDVSRLDVSPTEKFLIT----FSMNPIKPGED
   WD 3  316-362    IENNFQLL----DGKLHKVEGIQDFSFAPKGVQLTYNRRKSDPTTLLAYWT
   WD 4  431-469    -SEIPVEK----IE---MKDRVLELAWEPKGTRFVT----ISKMDNGGEEN

   WD40 Template    TGECLRTL----SG---HTSGVTSVSFSPDGKRLVS----GSEDGTIKVWD