WDRR: WD40 Repeat Recognition
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| JobID: RGIRF1659514317 Submitted: 2022-08-03 16:11:57 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79734882 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_2G031700 (Len=900) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_2G031700, Len=900): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIE 80
WD40-rpts
Query 81 TQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNG 160
WD40-rpts
Query 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVLH 240
WD40-rpts
Query 241 GSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPF 320
WD40-rpts (_________________WD 1________________)
Query 321 IQAPQSFPQLQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNTRMAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDN 400
WD40-rpts
Query 401 TDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQ 480
WD40-rpts (_________________WD 2________________)
Query 481 TGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWD 560
WD40-rpts (_________________WD 3________________) (______________WD 4_____________)
Query 561 DKELELQADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGH 640
WD40-rpts (_________________WD 5_________
Query 641 DKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDF 720
WD40-rpts _______) (_________________WD 6________________) (_________________WD 7____
Query 721 ICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRLGRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGE 800
WD40-rpts _____________) (_______________WD 8_______________) (________________WD 9___
Query 801 FLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAV 880
WD40-rpts _____________) (_________________WD10________________)(__________________WD
Query 881 SAASGLVASASHDRFIKLWK 900
WD40-rpts 11_________________)
 11 WD40-repeats found in QUERY=CsaV3_2G031700 (Len=900): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 259-297 3.20 247.03 0.02880 7.5% -17.75 WD 2: Seg 4 442-480 5.82 354.94 0.00102 10.0% 17.68 WD 3: Seg 6 483-521 5.26 332.08 0.00208 10.0% 12.77 WD 4: Seg 8 528-560 5.60 346.08 0.00135 20.0% 31.50 WD 5: Seg 13 610-648 8.98 485.73 1.8e-05 37.5% 56.15 WD 6: Seg 17 652-690 9.96 525.98 5.1e-06 40.0% 55.75 WD 7: Seg 21 695-734 8.02 445.99 6.1e-05 35.0% 50.17 WD 8: Seg 25 738-773 6.63 388.58 0.00036 22.5% 47.47 WD 9: Seg 29 777-814 8.54 467.59 3.1e-05 37.5% 52.29 WD10: Seg 33 821-859 7.95 443.19 6.6e-05 22.5% 56.92 WD11: Seg 37 860-900 8.66 472.30 2.7e-05 37.5% 52.40Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 259-297 -GS-TPDIKTEINPVLNPRAAGPEG-SLMGIPGSNHGGNNLT WD 2 442-480 -QS-SNHNMHQQEKIGGAGSVTMDG-SMSNSFRGNDQVSKNQ WD 3 483-521 -RK-RKQPVSSSGPANSSGTANTAG-PSPSSAPSTPSTHTPG WD 4 528-560 -----ALPHSGSSSKPLTMMFNSDG-TGTFTSPSN---QLWD WD 5 610-648 -FT-EVNSVRASTSKVSSCHFSSDG-KLLVSGGHDKKAVLWY WD 6 652-690 -LK-PKTSLEEHAAIVTDVRFSPSM-PRLATSSFDRTVRVWD WD 7 695-734 -CY-SLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWN WD 8 738-773 -GS-CAAVFKGG---TGPMRFQPRL-GRYFSAVVDNIVTIFD WD 9 777-814 -QA-RVHSLRGHTKTVQSLCWDPSG-EFLASVSED-SVRVWT WD10 821-859 -GE-SIHELSCNGNKFHSCVFHPTY-STLLVIGCYESLELWN WD11 860-900 TTENKTMTLSAHEGLVSSLAVSAAS-GLVASASHDRFIKLWK WD40 Template TGE-CLRTLSGHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD |
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