Input parameters:

  Query = CmaCh12G007860 (Len=564)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh12G007860, Len=564):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHRDVVTHVAVSSADFFITGSVDGHLKFWKKKPIGIEFAKHFRSHLGPIEGIAVSVDGLLCCTISNDHSVKIYDVVNYDM 80  
WD40-rpts      (____________WD 1____________) (___________________WD 2__________________)      

Query       81 MVMIRLPFIPGATEWVYKQGDVKARLAISDRNSTFVHIYDARSGSNEPIASREIHLGPVKVMKYNHVFDAVISADAKGII 160 
WD40-rpts                                                   (_________________WD 3_____________

Query      161 EYWTPDTLQFPENDVNFKFKSDTNLFEIVKCKTTVSVIEVSPDGKQFSVTSPDRKIRVFWYRTGKLRRVYDESLEFAQDL 240 
WD40-rpts      ___)        (_____________________WD 4_____________________)                    

Query      241 QRSDAPLYRLEAIDFGRRMAVEKEMEKAESAPEPNAVFDESSNFLIYATLLGIKVVNLHTNKVARILGKVENNDRFLRIA 320 
WD40-rpts                                                                                      

Query      321 LYQGDKSSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIG 400 
WD40-rpts                                                                                      

Query      401 KSVTTSLPDNVILHTTMGDIHMRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFE 480 
WD40-rpts                                                                                      

Query      481 DEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQTIEKVKTDKADKPYQDVKILNVS 560 
WD40-rpts                                                                                      

Query      561 VPKP 564 
WD40-rpts          

4 WD40-repeats found in QUERY=CmaCh12G007860 (Len=564):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-30       2.99  238.03  0.03791       27.5%     40.40
  WD 2:  Seg  4    32-74       5.92  359.19  0.00090       22.5%     55.04
  WD 3:  Seg 12   126-164      3.26  249.31  0.02686       17.5%     45.94
  WD 4:  Seg 16   173-220      4.08  283.33  0.00942       27.5%     49.62

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-30     M------------HRD---------VVTHVAVSSAD-FFITGSVDGHLKFWK
   WD 2   32-74     KPIGIEFAKHFRSHLG---------PIEGIAVSVDGLLCCTISNDHSVKIYD
   WD 3  126-164    -N---EPIASREIHLG---------PVKVMKYNHVFDAVISADAKGIIEYWT
   WD 4  173-220    -N---DVNFKFKSDTNLFEIVKCKTTVSVIEVSPDGKQFSVTSPDRKIRVFW

   WD40 Template    TG---ECLRTLSGHTS---------GVTSVSFSPDGKRLVSGSEDGTIKVWD