Input parameters:
Query = sp_Q5BE03_MED16_EMENI (Len=930)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (sp_Q5BE03_MED16_EMENI, Len=930):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPLIMEDGINVDDLFGESTSLELGLPTSTPTASTKGLAQRLDEMRLVGCCQKIAWSRLGCIASISQDSTRVNVRHLQCQQ 80
WD40-rpts
Query 81 SDGKWLLSDETPLNQVSEVHAGHALVHLCWNDSGTELAVADSSGRVSIYSIPIALNSVNVTRQAAFDPDDDGAQIVGMMW 160
WD40-rpts
Query 161 LSQYRSVHSFYQAAKVQGRWAYSPFRRRPIGTFHPAHKGALLCITRSGVMKLLYQNPDGRWAEITTELKNTSYSDRLLTH 240
WD40-rpts
Query 241 AALVTTQAGILVATHSACQRISLYRVSIQWTPSQWDPTQQKQGSQQFPTPSFRLVHMKVEVPYNIPSSNRDAGENPDEQL 320
WD40-rpts
Query 321 PFTSSLYCLTSLHIILPASDNSAGSTPNPWIVAVFSIPTHAILPHPQPQIPASVIVRWQLETSLMTLHPRFDDVPSKKGN 400
WD40-rpts
Query 401 GQVKPKTVLRRLDDITSGRHVISVDQTEYGNVLAVSYDDSSIAFYDPKTMAAFDGIDDANTVTSLAQAGFHYPLEPSALH 480
WD40-rpts
Query 481 MSFSPSACLIVGLDNDGQTHLRIMEHSYGAENGHYDENKYSAAIASLTLAFCRGCGGEVNTDDILLILIRQLSPDAQTAF 560
WD40-rpts
Query 561 LNEVYRALSINCNFTTEQDKLMNHPYIPRALSIQAALGFKGKFRARNIASNVPWAIIQLRQAAMIYPSFFQYNKGVQGPE 640
WD40-rpts
Query 641 PHDPDVLRLVLGNTKWALDFSLYILNELFDLADDFESVSSDQEAFNQKLKTTTSLPLIILLSSMSRAFLRFICRGLRGIH 720
WD40-rpts
Query 721 AGYANAPLTGDSRVYYTEICQTLDASPVRTDVYEKLLAGVDSAVKHAYTGAGFGDNERPGPEKELLVSSRIPPVLVPAVS 800
WD40-rpts
Query 801 TILRQTVPAMRGEMDRLAIFMGDYGWLGFGNDARSELYRRERDVDIIKKTPIASRSGKGSGLGSVEAVMGLGARNGNGSQ 880
WD40-rpts
Query 881 LSRRCVRCCEVSEAMYPPRSVLSFKMTLKLGHLRSCICGGMWNLEGGLPG 930
WD40-rpts
No WD40-repeats found in QUERY=sp_Q5BE03_MED16_EMENI (Len=930)!