WDRR: WD40 Repeat Recognition
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JobID: R7YJK1451074534    Submitted: 2015-12-26 04:15:34

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Job status:  [Done] Total run time: 288177800 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = sp_Q5BE03_MED16_EMENI (Len=930)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q5BE03_MED16_EMENI, Len=930):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLIMEDGINVDDLFGESTSLELGLPTSTPTASTKGLAQRLDEMRLVGCCQKIAWSRLGCIASISQDSTRVNVRHLQCQQ 80  
WD40-rpts                                                                                      

Query       81 SDGKWLLSDETPLNQVSEVHAGHALVHLCWNDSGTELAVADSSGRVSIYSIPIALNSVNVTRQAAFDPDDDGAQIVGMMW 160 
WD40-rpts                                                                                      

Query      161 LSQYRSVHSFYQAAKVQGRWAYSPFRRRPIGTFHPAHKGALLCITRSGVMKLLYQNPDGRWAEITTELKNTSYSDRLLTH 240 
WD40-rpts                                                                                      

Query      241 AALVTTQAGILVATHSACQRISLYRVSIQWTPSQWDPTQQKQGSQQFPTPSFRLVHMKVEVPYNIPSSNRDAGENPDEQL 320 
WD40-rpts                                                                                      

Query      321 PFTSSLYCLTSLHIILPASDNSAGSTPNPWIVAVFSIPTHAILPHPQPQIPASVIVRWQLETSLMTLHPRFDDVPSKKGN 400 
WD40-rpts                                                                                      

Query      401 GQVKPKTVLRRLDDITSGRHVISVDQTEYGNVLAVSYDDSSIAFYDPKTMAAFDGIDDANTVTSLAQAGFHYPLEPSALH 480 
WD40-rpts                                                                                      

Query      481 MSFSPSACLIVGLDNDGQTHLRIMEHSYGAENGHYDENKYSAAIASLTLAFCRGCGGEVNTDDILLILIRQLSPDAQTAF 560 
WD40-rpts                                                                                      

Query      561 LNEVYRALSINCNFTTEQDKLMNHPYIPRALSIQAALGFKGKFRARNIASNVPWAIIQLRQAAMIYPSFFQYNKGVQGPE 640 
WD40-rpts                                                                                      

Query      641 PHDPDVLRLVLGNTKWALDFSLYILNELFDLADDFESVSSDQEAFNQKLKTTTSLPLIILLSSMSRAFLRFICRGLRGIH 720 
WD40-rpts                                                                                      

Query      721 AGYANAPLTGDSRVYYTEICQTLDASPVRTDVYEKLLAGVDSAVKHAYTGAGFGDNERPGPEKELLVSSRIPPVLVPAVS 800 
WD40-rpts                                                                                      

Query      801 TILRQTVPAMRGEMDRLAIFMGDYGWLGFGNDARSELYRRERDVDIIKKTPIASRSGKGSGLGSVEAVMGLGARNGNGSQ 880 
WD40-rpts                                                                                      

Query      881 LSRRCVRCCEVSEAMYPPRSVLSFKMTLKLGHLRSCICGGMWNLEGGLPG 930 
WD40-rpts                                                        



No WD40-repeats found in QUERY=sp_Q5BE03_MED16_EMENI (Len=930)!

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Last modified: 09 Jan 2019