Input parameters:

  Query = 2GNQ_A_PDBID_CHAIN_SEQUENCE (Len=336)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2GNQ_A_PDBID_CHAIN_SEQUENCE, Len=336):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 GSMATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 80  
WD40-rpts                                                  (_____________WD 1____________)   (_

Query       81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160 
WD40-rpts      ________________WD 2________________)   (_________________WD 3________________) 

Query      161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 240 
WD40-rpts        (_________________WD 4________________)   (_________________WD 5______________

Query      241 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 320 
WD40-rpts      ___)   (__________________WD 6__________________)   (__________________WD 7_____

Query      321 AALENDKTIKLWKSDC 336 
WD40-rpts      ____________)   

7 WD40-repeats found in QUERY=2GNQ_A_PDBID_CHAIN_SEQUENCE (Len=336):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    45-75       8.26  456.03  4.4e-05       42.5%     47.08
  WD 2:  Seg  5    79-117     10.85  562.82  1.6e-06       45.0%     57.87
  WD 3:  Seg  9   121-159     10.89  564.68  1.5e-06       42.5%     56.36
  WD 4:  Seg 13   163-201     10.90  565.09  1.5e-06       45.0%     58.08
  WD 5:  Seg 17   205-244      9.45  505.05  9.7e-06       42.5%     55.10
  WD 6:  Seg 21   248-289      8.84  479.86  2.1e-05       37.5%     57.38
  WD 7:  Seg 25   293-333      8.43  462.83  3.6e-05       35.0%     52.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-75     ---------GHTKAVSSVKFS---PNGEWLASSS--ADKLIKIWG
   WD 2   79-117    GKFEKTI-SGHKLGISDVAWS---SDSNLLVSAS--DDKTLKIWD
   WD 3  121-159    GKCLKTL-KGHSNYVFCCNFN---PQSNLIVSGS--FDESVRIWD
   WD 4  163-201    GKCLKTL-PAHSDPVSAVHFN---RDGSLIVSSS--YDGLCRIWD
   WD 5  205-244    GQCLKTLIDDDNPPVSFVKFS---PNGKYILAAT--LDNTLKLWD
   WD 6  248-289    GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGS--EDNLVYIWN
   WD 7  293-333    KEIVQKL-QGHTDVVISTACH---PTENIIASAALENDKTIKLWK

   WD40 Template    GECLRTL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD