Input parameters:

  Query = CsaV3_4G000700 (Len=391)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G000700, Len=391):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESIDMDVEEHVNADSTSNSNSFKRFGLKNSIQTNFGDDYVFHITPNVDWTSMAVSLSSNVVKLYSPVTGQYYGECIGHT 80  
WD40-rpts      (___________WD 1__________)(_________________WD 2________________)   (__________

Query       81 GTVNQISFSVPSTPHVLHSCSSDGTIKSWDVRTFQQVSSISAGSSQEIFSFAYGGSNMSLLAAGCKSQILFWDWRNRKQV 160 
WD40-rpts      ________WD 3_________________)    (_________________WD 4________________)(______

Query      161 ACLEDSHVEDVTQVHFVPGHQGKLASASVDGLVCIFDTNGDIDDDDHMDSVINVGTSVGKIGFYGENYRKLWCLTHIETL 240 
WD40-rpts      _____________WD 5___________________)       (_________________WD 6______________

Query      241 SLWDWTDGRNEADITDARTLASNNWLMGHVDYLVDCHYSNEGCRLWVLGGTNDGTVGYFPINLSNGKTAIESPDVVLEGG 320 
WD40-rpts      ___)               (__________________WD 7_________________)          (_________

Query      321 HIGVVRSVLPTTNLLGGFSQSQSVFGWTGGEDGRLCCWSSDDSYEMNRSWISSTLVIKSPGGRRKNRHHPY 391 
WD40-rpts      _______WD 8________________)                                           

8 WD40-repeats found in QUERY=CsaV3_4G000700 (Len=391):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-27       2.95  236.43  0.03980       10.0%     27.51
  WD 2:  Seg  4    28-66       7.53  425.90  0.00011        7.5%     53.70
  WD 3:  Seg  8    70-110      8.86  480.76  2.1e-05       45.0%     58.53
  WD 4:  Seg 12   115-153      7.87  439.92  7.3e-05       15.0%     53.55
  WD 5:  Seg 16   154-197      7.26  414.57  0.00016       30.0%     54.49
  WD 6:  Seg 20   205-244      7.02  404.74  0.00022       12.5%     50.65
  WD 7:  Seg 24   260-300      7.09  407.60  0.00020       27.5%     47.31
  WD 8:  Seg 29   311-348      7.42  421.32  0.00013       22.5%     39.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-27     -----------------MESID-MDVEEH--V-NA--DSTSNSNSFKRFG
   WD 2   28-66     LK---NSI-QTNFGDDYVFHIT-PNVD-W--T-SM--AVSLSSNVVKLYS
   WD 3   70-110    -G---QYYGECIGHTGTVNQIS-FSVP-STPH-VL--HSCSSDGTIKSWD
   WD 4  115-153    -Q---QVSSISAGSSQEIFSFA-YGGS-N--M-SL--LAAGCKSQILFWD
   WD 5  154-197    WRNRKQVACLEDSHVEDVTQVH-FVPG-H--QGKL--ASASVDGLVCIFD
   WD 6  205-244    -D---DHMDSVINVGTSVGKIGFYGEN-Y--R-KL--WCLTHIETLSLWD
   WD 7  260-300    -L---ASNNWLMGHVDYLVDCH-YSNE-G--C-RLWVLGGTNDGTVGYFP
   WD 8  311-348    ES---PDVVLEGGHIGVVRSV---LPT-T--N-LL--GGFSQSQSVFGWT

   WD40 Template    TG---ECLRTLSGHTSGVTSVS-FSPD-G--K-RL--VSGSEDGTIKVWD