WDRR: WD40 Repeat Recognition
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| JobID: QZD081659462163 Submitted: 2022-08-03 01:42:43 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79788660 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh07G006770 (Len=671) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh07G006770, Len=671): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRRTARWLYTIGWSSKQGTATPQPVGSLLSTTYSAPRKAESGSFTGSSSPLTARTEILSISSVRARSHDSLASLSGLTAG 80
WD40-rpts
Query 81 VSAAMTSITSVELNYLVFRYLQESGFIHSAFALGYEAGINKCPIDGNLVPPAALITVVQKGLQYLEMEANLSNNDTDLDE 160
WD40-rpts
Query 161 NFSFLQPLDLITKDVHELRQIIKDKRKSLLKDKDVDKELESERGRTREKERRESEVECGRAREKERLEREKERLEREKER 240
WD40-rpts
Query 241 LERDKDHDKDRDKIEKEKEREKQHEDSDMVMDQDEKVHVNQGEAGVFGGPEPMDISTTSTSQSCEISSSDVTILQGHTSE 320
WD40-rpts (_________________WD 1________________)(___________
Query 321 VCACAWNPTGSLLASGSGDSTARIWTIADSSSRSGAQSSPLNVLVLKHVKGRTNEKSKDVTTLDWNVDGTLLATGSYDGQ 400
WD40-rpts _____WD 2________________) (________________WD 3____________
Query 401 ARIWNTNGELRSTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD 480
WD40-rpts ____) (_________________WD 4________________) (________________WD 5__________
Query 481 NMIFVCKIGETRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDKYVYDLKEHSKEIYTIRWSPTGPGTNN 560
WD40-rpts ______) (_________________WD 6________________) (_____________________WD 7__
Query 561 PNQQLVLASASFDSTVKLWDVEQGKLINSLNGHREPVYSVAFSPNGEYLASGSLDKSMHIWSLKSGKIVKTYTGNGGIFE 640
WD40-rpts ___________________) (_________________WD 8________________) (______________
Query 641 VCWNKEGDKIAACFANNTVLHNLVGRTTLLN 671
WD40-rpts __WD 9_______________)
 9 WD40-repeats found in QUERY=CmaCh07G006770 (Len=671): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 270-308 5.92 359.30 0.00089 10.0% 38.79 WD 2: Seg 6 309-346 9.85 521.63 5.8e-06 37.5% 46.27 WD 3: Seg 10 368-405 8.68 473.22 2.6e-05 25.0% 47.04 WD 4: Seg 13 408-446 10.09 531.62 4.2e-06 40.0% 51.62 WD 5: Seg 17 450-487 6.97 402.64 0.00023 17.5% 52.10 WD 6: Seg 21 491-529 9.85 521.73 5.8e-06 35.0% 57.32 WD 7: Seg 25 533-580 8.02 446.14 6.0e-05 32.5% 58.55 WD 8: Seg 29 584-622 10.57 551.14 2.3e-06 42.5% 56.52 WD 9: Seg 33 626-662 6.11 367.12 0.00070 17.5% 52.91Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 270-308 --VMDQDEKVHVNQGEAGVFGGPEPM---------DISTTSTSQSCEISS WD 2 309-346 --SDVTILQGHTSEV-CACAWNPTGS---------LLASGSGDSTARIWT WD 3 368-405 H--VKGRTNEKSKDV-TTLDWNVDGT---------LLATGSYDGQARIWN WD 4 408-446 -GELRSTLSKHKGPI-FSLKWNKKGD---------YLLTGSCDKTAIVWD WD 5 450-487 -EEWKQQFEFHSGPT-LDVDWRNNVS----------FATSSTDNMIFVCK WD 6 491-529 -TRPIKTFAGHQGEV-NCVKWDPTGS---------LLASCSDDITAKIWS WD 7 533-580 -DKYVYDLKEHSKEI-YTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWD WD 8 584-622 -GKLINSLNGHREPV-YSVAFSPNGE---------YLASGSLDKSMHIWS WD 9 626-662 -GKIVKTYTGN-GGI-FEVCWNKEGD---------KIAACFANNTV-LHN WD40 Template TGECLRTLSGHTSGV-TSVSFSPDGK---------RLVSGSEDGTIKVWD |
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