Input parameters:

  Query = DRS1 (Len=516)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (DRS1, Len=516):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEYERKRLENIRRNDEMLAALNVRAKASSLLSAAKRSRDDSKSFKKKKPKPASTPTVIRMSLRTRGLNPDSAGLPDGF 80  
WD40-rpts                                                        (_________________WD 1________

Query       81 SDFRMGSQITHNQPSPQKQSPRLLAPIPFESAYEGYGSYTQLVDTLLGIESKSCRGKLVKGEIGVVKDENESPMVRTRSS 160 
WD40-rpts      ________)                                                                       

Query      161 SRVSKVSVKKEEPEDDSFSDYVNKEFSIPVKPEKIEFDLDLLTLEPQNVARVVPGRIFVVQFLPCENVKMVAAGDKLGNV 240 
WD40-rpts                 (_____________WD 2_____________)__________________WD 3_______________

Query      241 GFWNLDCGNEEDNDGIYLFTPHSAPVSSIVFQQNSLSRVISSSYDGLIRLMDVEKSVFDLVYSTDEAIFSLSQRPNDEQS 320 
WD40-rpts      ___)        (_________________WD 4_________________)  (_________________WD 5____

Query      321 LYFGQDYGVFNVWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKTLSTVNHSRAVHS 400 
WD40-rpts      _____________)   (_________________WD 6_________________)       (_______________

Query      401 AYFSPSGLSLATTSLDNYIGVLSGANFENTCMIYHNNTSRWISKFKAVWGWDDSYIYVGNLSKKIDVINPKLKRTVMELH 480 
WD40-rpts      __WD 7________________)   (___________________WD 8__________________)   (_______

Query      481 NPLQRAIPCRIHCHPYNVGTLAGSTAGGQVYVWTTK 516 
WD40-rpts      ___________WD 9__________________)  

9 WD40-repeats found in QUERY=DRS1 (Len=516):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    51-89       5.17  328.11  0.00235       15.0%     -15.09
  WD 2:  Seg  4   172-203      3.56  261.91  0.01825        7.5%     16.14
  WD 3:  Seg  6   202-244      6.26  373.19  0.00058       20.0%     44.70
  WD 4:  Seg 10   253-292      7.87  439.76  7.4e-05       27.5%     53.61
  WD 5:  Seg 14   295-334      7.44  421.82  0.00013       25.0%     53.57
  WD 6:  Seg 18   338-377      8.39  461.31  3.8e-05       27.5%     52.16
  WD 7:  Seg 22   385-423      8.47  464.57  3.4e-05       30.0%     54.13
  WD 8:  Seg 26   427-469      6.20  370.62  0.00063       12.5%     54.28
  WD 9:  Seg 30   473-514      6.54  384.79  0.00041       12.5%     52.35

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   51-89     -P-KPASTPTVIRMS----LRTRG---LNP--DS-AG-LPDGFSDFRMGSQI
   WD 2  172-203    -E-PEDDSFSDYVNK----EFSIP---VKP--E---------KIEFDLDLLT
   WD 3  202-244    LTLEPQNVARVVPGR----IFVVQ---FLPCENV-KM-VAAGDKLGNVGFWN
   WD 4  253-292    -N-DGIYLFTPHSAP----VSSIV---FQQ--NSLSR-VISSSYDGLIRLMD
   WD 5  295-334    -K-SVFDLVYSTDEA----IFSLS---QRP-NDE-QS-LYFGQDYGVFNVWD
   WD 6  338-377    -G-KSVFHWELHERR----INSID---FNP--QN-PHVMATSSTDGTACLWD
   WD 7  385-423    -K-PKTLSTVNHSRA----VHSAY---FSP--SG-LS-LATTSLDNYIGVLS
   WD 8  427-469    -F-ENTCMIYHNNTSRWISKFKAV---WGW--DD-SY-IYVGNLSKKIDVIN
   WD 9  473-514    -K-RTVMELHNPLQR----AIPCRIHCHPY--NV-GT-LAGSTAGGQVYVWT

   WD40 Template    TG-ECLRTLSGHTSG----VTSVS---FSP--DG-KR-LVSGSEDGTIKVWD