WDRR: WD40 Repeat Recognition
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JobID: QXWPT1659461820    Submitted: 2022-08-03 01:37:00

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Job status:  [Done] Total run time: 79790146 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = CmaCh05G006540 (Len=1074)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (CmaCh05G006540, Len=1074): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLTVALDACALSCCSRVLNFNYRQVLHGTAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAEGSLMGIPGSNHGGNN 80  
WD40-rpts                                                                                      

Query       81 LTLKGWPLTGLEQLRSGILQQPKPFIQAPQPFPQLQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMTKDGLPN 160 
WD40-rpts                                                                                      

Query      161 SVGDVVPNVGSPLQAGSPLLPRGDNNDMMIKIKMAQLQQQQQQQQNSSQQQLQHSLSNQQSQSSNHNMHQQEKIGGAGSV 240 
WD40-rpts                                                                                      

Query      241 TMDGGMTNSFRGNDQVSKNQPGRKRKQPLSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLM 320 
WD40-rpts                                                                                      

Query      321 MFSSDGTGTFTSPSNQLWDDKEIELQADMERFVEDGSLDDNVDSFLSHDDTDPRDPVGRCMDGGKGAVNAIPCFLLILLL 400 
WD40-rpts        (___________________WD 1___________________)        (_________________WD 2____

Query      401 VSLQLPVRFTFTEVNSVRASTSKVSACHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHLSMITDVRFSPSMPRLAT 480 
WD40-rpts      ____________)_______________WD 3________________)   (_________________WD 4______

Query      481 SSFDRTVRVWDADNQCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGR 560 
WD40-rpts      __________)(___________________WD 5___________________)   (_______________WD 6__

Query      561 YFAAAVDNIVSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLSCSGNKFHSCVF 640 
WD40-rpts      _____________)   (________________WD 7________________)      (______________WD 8

Query      641 HPIQSSLLSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIKLWKPHCPLPFDQFRRRSEIRDFFIRGAG 720 
WD40-rpts      _____________)(__________________WD 9_________________)          (______________

Query      721 FRHSLLHRIRSYFPSSGCFPSASVVRVMSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVG 800 
WD40-rpts      _______WD10____________________)                                                

Query      801 KDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISE 880 
WD40-rpts                                                                                      

Query      881 SEEELNSVKKALASRLRETLALKWLLDDVPTQTELIQYERRFSELYINIQDKLRQTRRYYATYNALLEIKDLMLKEISLL 960 
WD40-rpts                                                                                      

Query      961 NSISSQANVSVYTQLWPCEFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCY 1040
WD40-rpts                                                                                      

Query     1041 ALLKAFQSSLEDFKIVLINLKRVALPRSNFKAGM 1074
WD40-rpts


10 WD40-repeats found in QUERY=CmaCh05G006540 (Len=1074):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   323-366      3.44  256.56  0.02151       10.0%     20.54
  WD 2:  Seg  6   375-413      2.93  235.59  0.04083       15.0%     32.45
  WD 3:  Seg  8   411-449      9.11  491.17  1.5e-05       32.5%     56.30
  WD 4:  Seg 12   453-491      9.96  526.07  5.0e-06       40.0%     55.83
  WD 5:  Seg 16   492-535      7.85  438.73  7.6e-05       35.0%     51.20
  WD 6:  Seg 20   539-574      6.61  387.52  0.00037       20.0%     48.12
  WD 7:  Seg 24   578-615      8.40  461.78  3.7e-05       37.5%     51.62
  WD 8:  Seg 28   622-654      4.20  288.17  0.00812       25.0%     45.43
  WD 9:  Seg 31   655-695      8.61  470.51  2.8e-05       30.0%     56.01
  WD10:  Seg 36   706-752      5.14  326.81  0.00245       12.5%     26.11
Multiple sequence alignment of 10 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  323-366    SSD-------GTGTFTSPSNQLWDDKEIELQADMER--FVEDGSLDDNVDSFL
   WD 2  375-413    -DP-------VGRCMDGGKGAVNAIPCF-----LLI-LLLVSLQLPVRFTFTE
   WD 3  411-449    -FT-------EVNSVRASTSKVSACHFS-----SDG-KLLASGGHDKKAVLWY
   WD 4  453-491    -LK-------PKTSLEEHLSMITDVRFS-----PSM-PRLATSSFDRTVRVWD
   WD 5  492-535    ADN----QCYSLRTFTGHSASVMSLDFH-----PKKDDFICSCDGDGEIRYWN
   WD 6  539-574    -GS-------CAAVFKGG---TGQLRFQ-----PRL-GRYFAAAVDNIVSIFD
   WD 7  578-615    -QA-------RLHSFQGHTKTVNSLCWD-----PSG-EFLASVSED-SVRVWT
   WD 8  622-654    -GE-------SIHDLSCSGNKFHSCVFH-----PIQ-SSLLS------LELWN
   WD 9  655-695    TTE------NKTMFVSAHEGLISSLAGS-----TAS-GLVASASHDKFIKLWK
   WD10  706-752    RRRSEIRDFFIRGAGFRHSLLHRIRSYF-----PSS-GCFPSASVVRVMSEAI

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFS-----PDG-KRLVSGSEDGTIKVWD
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Last modified: 09 Jan 2019