Input parameters:

  Query = CsaV3_3G041940 (Len=301)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G041940, Len=301):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSQKIETGHQDMVHDVQMDYYGKRIATASSDFTIKIVGVSKDSGSQILATLNGHKGPVWQVAWAHPKFGSMVASSSYDG 80  
WD40-rpts         (_______________WD 1_______________)      (__________________WD 2____________

Query       81 QVIIWKEGNQNQWSQAHVFSAHKSSVNSIAWAPHELGLCLACGSSDGSISVFIARSDGGWDNNPIEQAHPVGVTSVSWGP 160 
WD40-rpts      _____)(_____________________WD 3____________________)      (____________________

Query      161 MTAPGSLVGSSSEDPVWKLASGGFDSSVKVWTLKDGSWRRDSSLSLQIHTDWVRDVAWSPNLGLQKSTIASGSQDGTVII 240 
WD40-rpts      ____WD 4_______________________)       (___________________WD 5_________________

Query      241 WSTKEGGKWDATLVNDFKTPIWKVSWSLTGDLLAVSDGNNHITLWKEGTGGKWQQVTTVEP 301 
WD40-rpts      _)(___________________WD 6___________________)               

6 WD40-repeats found in QUERY=CsaV3_3G041940 (Len=301):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-39       8.65  472.00  2.7e-05       30.0%     48.84
  WD 2:  Seg  4    46-86       8.32  458.41  4.1e-05       32.5%     55.78
  WD 3:  Seg  8    87-133      8.17  452.33  5.0e-05       37.5%     57.57
  WD 4:  Seg 12   140-192      7.33  417.29  0.00015       37.5%     45.19
  WD 5:  Seg 15   200-242      7.95  443.11  6.6e-05       35.0%     48.08
  WD 6:  Seg 19   243-286      8.14  450.86  5.2e-05       22.5%     56.63

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-39     -------------QKIETGHQDMVHDVQMDY--Y----GK--------------RIATASSDFTIKIVG
   WD 2   46-86     -S-----Q----ILATLNGHKGPVWQVAWAHPKF----GS--------------MVASSSYDGQVIIWK
   WD 3   87-133    EGNQNQWS----QAHVFSAHKSSVNSIAWAP--H--ELGL--------------CLACGSSDGSISVFI
   WD 4  140-192    -W-----D----NNPIEQAHPVGVTSVSWGP--M----TAPGSLVGSSSEDPVWKLASGGFDSSVKVWT
   WD 5  200-242    -R-----D----SSLSLQIHTDWVRDVAWSP--NLGLQKS--------------TIASGSQDGTVIIWS
   WD 6  243-286    TK-----EGGKWDATLVNDFKTPIWKVSWSL--T----GD--------------LLAVSDGNNHITLWK

   WD40 Template    TG-----E----CLRTLSGHTSGVTSVSFSP--D----GK--------------RLVSGSEDGTIKVWD