Input parameters:

  Query = sp_A3LY29_EIF3B_PICST (Len=712)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_A3LY29_EIF3B_PICST, Len=712):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLTEAEYHELEKQVNLDDIDFSDLEEQYEVDVGLDNYVVVDGAPIAPEAKVPVLIKVLKKLFNTVGKVVEGDEGIYMPL 80  
WD40-rpts                                                                                      

Query       81 EDGKSKGYLFVQFETSEMAEAAIKQLHGKKLDQKHRLLVNRLSDIEKYGVEGNVAAEFVEPELPPFKSHGYLKSWLQDPQ 160 
WD40-rpts                                                                                      

Query      161 GRDQIALHHSETFGVFWNKKKSDPEPVFEPRKFFTSKYAKFSPKGTYLFSIHPQGVQSWGGADFSSIDKFMHNQVRLVDF 240 
WD40-rpts                                                                                      

Query      241 SPNEKYMVTLSPLPITAPDSAAERAVFPFGPESYGHKLVIWDLTTGEPARTFALPPHLEGQKEMPWPLVKWSHDDKYCAR 320 
WD40-rpts         (_________________WD 1________________)                                      

Query      321 QGPGALAVYETPSFQLLDKKLIKIDDIVDFEWAPAGVHLANNKSENGHHLLSYWTPESSNQTARVAVMQIPTRQILRTVN 400 
WD40-rpts                   (_________________WD 2________________)                    (_______

Query      401 LFQVSDCKMHWQSEGKLLCVKVDRHTKSGKTIFTNLEFFKTTEKDIPVEKLELKEIVINFAWEPKSERFVIISRLDDGNL 480 
WD40-rpts      __________WD 3________________)            (_________________WD 4_______________

Query      481 NSAIPKNIIDFYAPDVNGKGKSATSVYKSYKTITDKHSNTVFWSPKGRYVVVATISRSNGEIEFFDVSFDDSNKNAPANV 560 
WD40-rpts      _)                                                                           (__

Query      561 KLLKNDKFSGMTNISWDPSGRFVATWSSSWLHTIENGYKLYEFTGNLLRDDSIDQFKEFIWRPRPASLLNSADRKKVRAN 640 
WD40-rpts      __________________WD 5___________________)                                      

Query      641 LREYSAQFEESDAMEADAALRELIYARRRALEDWKAYRAKHASKAVKANEVQAEIIEEIKEEIIEEKEEIVE 712 
WD40-rpts                                                                              

5 WD40-repeats found in QUERY=sp_A3LY29_EIF3B_PICST (Len=712):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   244-282      4.36  294.93  0.00658       15.0%     13.33
  WD 2:  Seg 18   334-372      4.83  314.31  0.00361       10.0%     29.48
  WD 3:  Seg 21   393-431      3.66  265.97  0.01610       17.5%     36.19
  WD 4:  Seg 25   444-482      3.81  271.98  0.01338       12.5%     34.69
  WD 5:  Seg 33   558-602      3.65  265.64  0.01627       20.0%     52.84

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  244-282    EKYMVTLSPLPITAPDSAAERAVFPFGPESY------GHKLVIWD
   WD 2  334-372    FQLLDKKLIKIDDIVDFEWAPAGVHLANNKS------ENGHHLLS
   WD 3  393-431    RQILRTVNLFQVSDCKMHWQSEGKLLCVKVD------RHTKSGKT
   WD 4  444-482    KDIPVEKLELKEIVINFAWEPKSERFVIISR------LDDGNLNS
   WD 5  558-602    ANVKLLKNDKFSGMTNISWDPSGRFVATWSSSWLHTIENGYKLYE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSE------DGTIKVWD