Input parameters:

  Query = CmaCh16G009490 (Len=652)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh16G009490, Len=652):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSYHGDDTDYMADEYEMEDIDDDMDDEYHDREVEGSDSDADEFHSSSRIVDTTAAQARRGIDIQGIPWERLSITREKYR 80  
WD40-rpts                                                                                      

Query       81 KTRLEQYKNYENIPNSGEGSEKDCKVTGKAHSYYDFYRNSRSVKSTILHFQLRNLVWATSKHDAYLLSHFSVIHWSSLSC 160 
WD40-rpts                                                                (_________________WD 1

Query      161 TKSEVLNVSGHVAPTEKHPGSLLEGFTQTQVSTLAVKDNLLVAGGFQGELICKNLDRPGVSFCSRTTYDDNAITNAVEIY 240 
WD40-rpts      _________________)    (_____________WD 2_____________)(_____________________WD 3

Query      241 SSASGAVHFTASNNDSGVRDFDMEKFQLSKHFCFPWPVNHAALNPDGKLLVIVGDNPEGLLVDSQTGKTVAPLCGHLDFS 320 
WD40-rpts      _____________________)(__________________WD 4_________________)   (_____________

Query      321 FASAWHSDGVTFATGNQDKTCRIWDVRNLSKSVAALKGNLGAIRSIRYSLDGQYMAMAEPADFVHVFDVKSGYEKEQEID 400 
WD40-rpts      ____WD 5________________)    (_________________WD 6________________)            

Query      401 FFGEISGPRRRGKNLEMTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRKEGQDTHDELQRRNLRDELE 480 
WD40-rpts        (_________________WD 7________________)                                       

Query      481 DRERRHFSSKNKSYDDREHRKGSQLLLEGEFISSCGKRDIEDRIIPRSLDADDSDVDIKSDSESDDDDEDDDEDDTEALL 560 
WD40-rpts                                                                                      

Query      561 AELEQIKKERAEEKLRKERQEREEELKVKEAELLRGNPLLNEQPASFSVKRRWDDDVVFKNQARGETKTPKRFINDTIRN 640 
WD40-rpts                                                                                      

Query      641 DFHRKFLQKYMK 652 
WD40-rpts                  

7 WD40-repeats found in QUERY=CmaCh16G009490 (Len=652):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   139-178      7.50  424.43  0.00012       17.5%     30.05
  WD 2:  Seg  7   183-214      4.56  303.07  0.00512       22.5%     46.08
  WD 3:  Seg 10   215-262      6.17  369.57  0.00065       17.5%     50.63
  WD 4:  Seg 14   263-303      7.58  427.92  0.00011       22.5%     57.52
  WD 5:  Seg 18   307-345      9.93  524.93  5.2e-06       27.5%     53.15
  WD 6:  Seg 22   350-388      8.93  483.51  1.9e-05       20.0%     55.41
  WD 7:  Seg 27   403-441      6.42  379.74  0.00047       15.0%     37.08

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  139-178    TSK-----HDAYLLSHFSVIHWS---SLSCTKSEVLNVSGHVAPTEKH
   WD 2  183-214    ------------LEGFTQTQVST---LAVKDN-LLVAGGFQGELICKN
   WD 3  215-262    LDRPGVSFCSRTTYDDNAITNAVEIYSSASGAVHFTASNNDSGVRDFD
   WD 4  263-303    MEK----FQLSKHFCFPWPVNHA---ALNPDGKLLVIVGDNPEGLLVD
   WD 5  307-345    -GK-----TVAPLCGHLDFSFAS---AWHSDGVTFATGNQDKTCRIWD
   WD 6  350-388    -SK-----SVAALKGNLGAIRSI---RYSLDGQYMAMAEPADFVHVFD
   WD 7  403-441    -GE-----ISGPRRRGKNLEMTT---AARPTWAPAKGGNEQGGTRIFG

   WD40 Template    TGE-----CLRTLSGHTSGVTSV---SFSPDGKRLVSGSEDGTIKVWD