Input parameters:

  Query = CmaCh17G001230 (Len=775)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh17G001230, Len=775):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMRASFGAFDDSNSPSTSTPPLPPHISQPGPAYPTSRQRVSNVFQLLAQREVSPRTKCASRSFWGDSHDRQCDSVGPRCE 80  
WD40-rpts            (_________________WD 1________________)        (________________WD 2______

Query       81 AARDAKRGLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGTCLKVLSGHRRTPWVV 160 
WD40-rpts      __________)         (_________________WD 3_________________)   (________________

Query      161 RFHPLRPEILASGSLDYDVRLWDANTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYIWHYNKRGETPSPTIVLRTR 240 
WD40-rpts      _WD 4_________________)   (________________WD 5_______________)      (__________

Query      241 RSLRAVHFHPHAAQFLLTAEVNDLDTSESAITLATSPGYVQYPPPTVYFADAQSSDRSSLVDGLPLMSFPLLIWPSFSKE 320 
WD40-rpts      ____WD 6______________)   (_______________WD 7_______________)            (_____

Query      321 NRRMSMHRTEAEPGAGRLQRVDPSASVRLLTYSTPSGQYELVLSPIDPNSSSPVPEETGTNPYSNEMETEVSETAVDASE 400 
WD40-rpts      ___________WD 8_______________)     (_________________WD 9________________)   (_

Query      401 NMEVQNEVRNNQNFPFNDPWELPFLQGWLIGQSQASQPALRPHNDDVREHSSAASDIGGIHAPLTSLIPSSVSQSRGRRS 480 
WD40-rpts      ___________________WD10___________________)                                     

Query      481 GSRNRSLRSRAPVPVSGSDEGASMSTSIPDESDPQPIVSRIQSELAASLAAVAAAELPCTVKLRIWSHDVKNPCAPLDDE 560 
WD40-rpts                                                                            (_________

Query      561 RCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMEADPGFQSHANNDATGAATSPTRHPVLAQQVMYELRIYSLEEA 640 
WD40-rpts      ___________WD11____________________)(_________________WD12_________________)    

Query      641 TFGMVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHSSLLKSVVVDGETTVPIYTILEVYRVSDMELVRVLPSAEDEVN 720 
WD40-rpts                                                                       (______________

Query      721 VACFHPSVGGGVVYGTKEGKLRILQYDSSQALNHSSYGGFLDENMLEVPTYALEC 775 
WD40-rpts      ___WD13_________________)                              

13 WD40-repeats found in QUERY=CmaCh17G001230 (Len=775):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-45       4.96  319.38  0.00309       10.0%     25.91
  WD 2:  Seg  5    54-91       3.41  255.44  0.02226       10.0%     33.17
  WD 3:  Seg 10   101-140     10.01  528.32  4.7e-06       30.0%     47.69
  WD 4:  Seg 13   144-183      8.90  482.50  2.0e-05       42.5%     55.50
  WD 5:  Seg 17   187-223      6.14  368.36  0.00068       20.0%     54.14
  WD 6:  Seg 21   230-263      3.73  268.88  0.01472       15.0%     37.80
  WD 7:  Seg 24   267-302      5.73  351.32  0.00115       15.0%     48.90
  WD 8:  Seg 29   315-351      6.30  374.75  0.00055        7.5%     33.28
  WD 9:  Seg 32   357-395      7.20  412.21  0.00017       15.0%     15.78
  WD10:  Seg 33   399-443      3.16  245.29  0.03038        7.5%      4.19
  WD11:  Seg 36   551-596      2.90  234.26  0.04252       15.0%     14.83
  WD12:  Seg 39   597-636      6.84  397.17  0.00028       10.0%     10.74
  WD13:  Seg 44   706-745      7.44  422.13  0.00013       25.0%     49.47

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-45     GAFDDSNSPSTST----------PPLPPHISQ------P-GPAYPT------SRQRVSNVFQ
   WD 2   54-91     -------PRTKCA----------SRSFWGDSH------D-RQCDSVGPRCEAARDAKRGLIS
   WD 3  101-140    LSAKYCPLLPPPR----------STIAAAFSP------D-GRTLAST-----HGDHTVKIID
   WD 4  144-183    -GTCLKVLSGHRR----------TPWVVRFHP-----LR-PEILASG-----SLDYDVRLWD
   WD 5  187-223    -AECIGSRDFYRP-----------IASIAFHA------Q-GELLAVA-----S-GHKLYIWH
   WD 6  230-263    -TPSPTIVLRTRR----------SLRAVHFHP------H-AAQFLL----------TAEVND
   WD 7  267-302    -SESAITLATSPG-------------YVQYPP------P-TVYFADA-----QSSDRSSLVD
   WD 8  315-351    ---PSFSKENRRM----------SMHRTEAEP------G-AGRLQRV-----DPSASVRLLT
   WD 9  357-395    -GQYELVLSPIDP----------NSSSPVPEE------T-GTNPYSN-----EMETEVSETA
   WD10  399-443    -SENMEVQNEVRN----------NQNFPFNDPWELPFLQ-GWLIGQS-----QASQPALRPH
   WD11  551-596    -KNPCAPLDDERCRLIIPHAVLCSEMGAHFSP------C-GRFLAAC-----V---ACMLPH
   WD12  597-636    MEADPGFQSHANN----------DATGAATSP------T-RHPVLAQ-----QVMYELRIYS
   WD13  706-745    -MELVRVLPSAED----------EVNVACFHP------SVGGGVVYG-----TKEGKLRILQ

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSP------D-GKRLVSG-----SEDGTIKVWD