WDRR: WD40 Repeat Recognition
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| JobID: QFXM31459342137 Submitted: 2016-03-30 20:48:57 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 279908897 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_Q9Y4B6_VPRBP_HUMAN (Len=1507) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_Q9Y4B6_VPRBP_HUMAN, Len=1507): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTTVVVHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSQLIEKETEEYRKGDPDPFDDRHPGRADPECMLGHLLRILFK 80
WD40-rpts
Query 81 NDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDI 160
WD40-rpts
Query 161 AANYRDENSQLVAIVLRRLRELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGDQEEASGDMEIS 240
WD40-rpts
Query 241 FHLDSGHKTSSRVNSTTKPEDGGLKKNKSAKQGDRENFRKAKQKLGFSSSDPDRMFVELSNSSWSEMSPWVIGTNYTLYP 320
WD40-rpts
Query 321 MTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYIDLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKL 400
WD40-rpts
Query 401 LEIPRPSMAATGVSMCLYYLSYNQDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRY 480
WD40-rpts
Query 481 DGLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKA 560
WD40-rpts
Query 561 CSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQL 640
WD40-rpts
Query 641 AESVDVLDEAGSTVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQNPKSSEH 720
WD40-rpts
Query 721 TLAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSCQIQQLMKEPVLQDKRS 800
WD40-rpts
Query 801 DHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTA 880
WD40-rpts
Query 881 ASHSSAFTPVTAAASPVSLPRTPRIANGIATRLGSHAAVGASAPSAPTAHPQPRPPQGPLALPGPSYAGNSPLIGRISFI 960
WD40-rpts
Query 961 RERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEP 1040
WD40-rpts
Query 1041 KQRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLY 1120
WD40-rpts (_________________WD 1________________
Query 1121 NVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIA 1200
WD40-rpts ) (__________________WD 2_________________)(_________________WD 3_____________
Query 1201 HIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIW 1280
WD40-rpts ___)
Query 1281 DLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLMEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTD 1360
WD40-rpts
Query 1361 TKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEED 1440
WD40-rpts
Query 1441 DNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEEVELILGDTDSSDNSDLEDDIILSLNE 1507
WD40-rpts
 3 WD40-repeats found in QUERY=sp_Q9Y4B6_VPRBP_HUMAN (Len=1507): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 8 1083-1121 6.42 379.65 0.00048 25.0% 54.81 WD 2: Seg 12 1125-1165 5.53 342.91 0.00149 22.5% 51.15 WD 3: Seg 15 1166-1204 4.89 316.78 0.00335 15.0% 45.63Multiple sequence alignment of 3 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1083-1121 ISVFREANEDESGFTCCAFSARERFLMLGT--CTGQLKLYN WD 2 1125-1165 GQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWG WD 3 1166-1204 MKSVFDMKHSFTEDHYVEFSKHSQDRVIGT--KGDIAHIYD WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGS--EDGTIKVWD |
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