WDRR: WD40 Repeat Recognition
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| JobID: QEDOW1659497791 Submitted: 2022-08-03 11:36:31 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79753650 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh09G009260 (Len=1283) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh09G009260, Len=1283): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAKYSLGSEPVVGSLTPSRKREYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDE 80
WD40-rpts (___________________WD 1__________________) (____________
Query 81 DKDESFYTVSWAFNVDGSPFVVAGGINGIIRVIDAGSEKIYKSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHT 160
WD40-rpts _________WD 2____________________) (_________________WD 3_________________)
Query 161 GICILVFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS 240
WD40-rpts (___________________WD 4__________________) (__________
Query 241 NYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 320
WD40-rpts ______WD 5_______________) (__________________WD 6_________________)(
Query 321 QSSPPVLIARLSHAQSKSPIRQTAMSFDGRKSFRLPCPCFFYGVQRGCFLPFSNCWGLKKKQPGVMIRVESEELVILVFW 400
WD40-rpts __________________________WD 7__________________________)
Query 401 VLGVLFTLILGMRNDGALKQQGSVARSGRAHSFISSSFRAFSSYMKNVSSGASTVARSAASVASSLVDKDGEAKGSQVNW 480
WD40-rpts
Query 481 AGFDKLERDDNVIRRVLLLGFRSGFQVWDVEEANNVQVLVSRYDGSVSYMQVLPRPVPSMRSGDKFAESRPLLVLSASGS 560
WD40-rpts (_________________WD 8________________)
Query 561 IAAAFNIQDQLATSGNAAISKGQELVDGNFMPTFVRFYSLKSQTYVDELKFRSVVYSVRCSPLVVAISLATQIHCINATT 640
WD40-rpts (_________________WD 9________________)
Query 641 LEKEHIILTNPVVSGFPGSGGGIGYGPLAVGPRWLAYSGSPITVSNTGRVIPQHLKPSASFSHSSSNGSLVAHYAKESSK 720
WD40-rpts (________________________WD10_________
Query 721 QLAAGIVTLGDKGIKKLSRYYSDLLPESYNSLQSGAQGIGALNGHAADTDSVGMVIVKDIVSKVIITQFKAHKSPISALC 800
WD40-rpts ______________) (__________________WD11__________________) (_________________
Query 801 FNPSGIILVTASVQGHSVNVFKIMPSSRSDSSASYSHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPSG 880
WD40-rpts WD12_________________) (______________WD13_____________)
Query 881 GQVNIPSADISSITRNGGPVVPARQIVRQVDSGSHVSSKQSQCATGSPPTLSPITRLHHGSNGWRGTVSSAAAAASGRAG 960
WD40-rpts
Query 961 IVLGAIASTFHECKGNASHIDNRSSEARYDILVFAPSGNMIQYALRVGLDSTIVLPRSSTALELAPELDARLVVEPIQKW 1040
WD40-rpts (_____________________WD14____________________
Query 1041 NISQKPSCRAQDNSIDIYGDSGGFDCKKNYCEEMNGNSIVLEASGTVLKAEKTCREEQYHLYISEAELQMHAALTPLWTK 1120
WD40-rpts )
Query 1121 PEIYFQVMARDGVEGDEIDRYGELEIERIPTRMIEARSKDLIPVFDHLQPPKFPQTRLLNSSSDPKCSRPENGRQSWRNV 1200
WD40-rpts
Query 1201 TIPHGSVIGNGPEGTGRHGYKMVTETKGTVNEHECPRSQTQLNNVNNCTESLSMESQPKSVNNHKSGLGLENHYEDHICD 1280
WD40-rpts
Query 1281 ELE 1283
WD40-rpts
 14 WD40-repeats found in QUERY=CmaCh09G009260 (Len=1283): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 22-64 4.01 280.34 0.01034 12.5% 53.43 WD 2: Seg 5 68-114 6.17 369.66 0.00065 30.0% 56.36 WD 3: Seg 9 118-157 8.03 446.25 6.0e-05 17.5% 55.81 WD 4: Seg 13 161-203 7.69 432.37 9.3e-05 40.0% 57.56 WD 5: Seg 18 230-266 5.39 337.43 0.00176 22.5% 46.41 WD 6: Seg 22 279-319 6.60 387.09 0.00038 22.5% 49.44 WD 7: Seg 26 320-377 4.27 290.98 0.00744 15.0% 37.87 WD 8: Seg 38 514-552 3.05 240.63 0.03502 7.5% 19.16 WD 9: Seg 41 561-599 6.12 367.55 0.00069 2.5% 32.93 WD10: Seg 51 683-735 4.05 282.10 0.00979 15.0% 24.08 WD11: Seg 54 738-779 6.31 375.40 0.00054 12.5% 27.81 WD12: Seg 56 783-822 7.32 416.84 0.00015 25.0% 57.76 WD13: Seg 61 843-875 5.66 348.44 0.00125 20.0% 47.60 WD14: Seg 71 995-1041 2.89 233.98 0.04289 12.5% 24.81Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 22-64 EYR-------------VTNRLQ---EGKRP-------LYA--VVFNF-IDS--RYFNVFA------------TVGGNR----VTVYQ WD 2 68-114 -GG-------------VIAVLQ---SYVDEDKDESFYTVS--WAFNV-DGS-PF---VVA------------GGINGI----IRVID WD 3 118-157 -EK-------------IYKSFV---GHGDS-------INE--IRTQPLKPS--L---VIS------------ASKDES----VRLWN WD 4 161-203 -GI-------------CILVFAGAGGHRNE-------VLS--VDFHPSDIY--R---IAS------------CGMDNT----VKIWS WD 5 230-266 -QF-------------PVFIAS---VHSNY-------VDC--SRW---LGD--F---ILS------------KSVDNE----IVLWE WD 6 279-319 -VD-------------ILQKYP---VPECD-------IWF--IKFSC-DFHYNA---AAI------------GNREGK----IFVWE WD 7 320-377 LQS-------SPPVLIARLSHA---QSKSP-------IRQ--TAMSF-DGR--K---SFRLPCPCFFYGVQRGCFLPF----SNCWG WD 8 514-552 -NN-------------VQVLVS---RYDGS-------VSY--MQVLP-RPV--P---SMR------------SGDKFA----ESRPL WD 9 561-599 -IA-------------AAFNIQ---DQLAT-------SGN--AAISK-GQE--L---VDG------------NFMPTF----VRFYS WD10 683-735 TVSNTGRVIPQHLKPSASFSHS---SSNGS-------LVA--HYAKE-SSK--Q---LAA------------GIVTLG----DKGIK WD11 738-779 SRY-------------YSDLLP---ESYNS-------LQSGAQGIGA-LNG--H---AAD------------TDSVGM----VIVKD WD12 783-822 -KV-------------IITQFK---AHKSP-------ISA--LCFNP-SGI--I---LVT------------ASVQGH---SVNVFK WD13 843-875 RG-----------------------FTNAV-------IQD--ISFSY-DSN--W---IMI------------SSSRGT----SHLFA WD14 995-1041 APS----------GNMIQYALR---VGLDS-------TIV--LPRSS-TAL--E---LAP------------ELDARLVVEPIQKWN WD40 Template TGE-------------CLRTLS---GHTSG-------VTS--VSFSP-DGK--R---LVS------------GSEDGT----IKVWD |
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