WDRR: WD40 Repeat Recognition
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| JobID: QDS051659460458 Submitted: 2022-08-03 01:14:18 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79790680 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh02G013960 (Len=1085) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh02G013960, Len=1085): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEMSEEMTLLDVTEDAHVQNKVRQDAQENEYLLKPENINMVVSQEMLMPIDGGYSQDYPHEFTDILEGKNLNRCKNNVK 80
WD40-rpts
Query 81 LSDQPECSPHCMDDAGVMVEELTVKNQSSSNLAIIGPSNNRARLLSGHSPWQHLYQLASGSGSGSSLVDTSYKNIGQAVI 160
WD40-rpts
Query 161 TGLENGGYSSFPESFVGGANRNDCGEELEELKAIDNKGVDALGSIRTKILSKSGFPEYFVKNTLKGKGIIRRGVPLEGFS 240
WD40-rpts
Query 241 VEHRNLKNARNAGGITLASDSSLRHDAKAVMPSTYKKSERKRQSSALDGINLREWLKVPHEKVNKTKCLYIFRRIVELVD 320
WD40-rpts
Query 321 RAHARGVFLHDLRPSTFRILTTNQVRYFGSFIQGKMPESLMVIDSQCSDSRPTRKRPLEQGNFLSFGVSPKKQKDIQNTS 400
WD40-rpts
Query 401 LMARHSHFPLKSCVNLETANTRDCNMNDLENYDEHFAERGVWSMPAGHCAYDSAQTPISDQLEENWYASPEELNAGCFSA 480
WD40-rpts
Query 481 KSNIFSLGVLLFELLGKFESDGTLAAAMSNLRDRILPPNFLADNLKEVGFCLWLLHPEPASRPTTREILQSELINGMTNS 560
WD40-rpts
Query 561 PPLELSTSIDEEDAESELLLQFLTSLNEQKQKQAAKLAEDIRHLESDIEEVNKRHRSTEPLVKSGLSSTVDGRDDFVFHG 640
WD40-rpts
Query 641 GYQNSDVHSVVSKILHINEERIEKNIIQLESAYFSMRSKVDSSENDSAVRTDIDLFRTRENCYLPQKDDERTHGDRLRAF 720
WD40-rpts
Query 721 FDGFCKYSRYSKFQVRGVLRSGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFDFNSVFSDSVDIHYPAVEMFNRSKL 800
WD40-rpts (______________WD 1______________)(______________________W
Query 801 SCVCWNSYIRNYLASTDYDGVVKLWDATVGQEVFQFKEHEKRAWSVDFSKVHPTKLASGSDDCAKNSLGTIRNIANVCCV 880
WD40-rpts D 2______________________) (_________________WD 3_________________)(__________
Query 881 QFSAHSTHMLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSETLVSASTDNTLKLWDLNRTNPTGLSTNACS 960
WD40-rpts ____WD 4______________) (________________WD 5________________) (___
Query 961 LTLNGHTNEKNFVGLSVSDSYIACGSETNEVYAYHRSLPMPITSYKFGSIDPVSGKETEDDNGQFVSSVCWRGKSDMVVA 1040
WD40-rpts ______________WD 6________________)
Query 1041 ANSIALQLVNLTEYLKPDSENRCNDHSLFQEPGSIGCLHNVKPGG 1085
WD40-rpts
 6 WD40-repeats found in QUERY=CmaCh02G013960 (Len=1085): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 14 743-776 6.17 369.50 0.00065 15.0% 47.75 WD 2: Seg 17 777-826 5.07 323.89 0.00268 22.5% 45.11 WD 3: Seg 21 830-869 6.88 398.77 0.00026 27.5% 54.85 WD 4: Seg 25 870-903 4.79 312.47 0.00382 25.0% 47.69 WD 5: Seg 28 908-945 7.61 429.00 0.00010 40.0% 50.59 WD 6: Seg 32 957-995 7.22 412.76 0.00017 27.5% 53.72Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 743-776 ---------------DFNSSSNVICSLSFDR-DE-D-YFAAAGVSKKIRIFD WD 2 777-826 FNSVFSDSVDIHYPAVEMFNRSKLSCVCWNSYIR-N-YLASTDYDGVVKLWD WD 3 830-869 -GQEV---------FQFKEHEKRAWSVDFSK-VHPT-KLASGSDDCAKNSLG WD 4 870-903 T----------------IRNIANVCCVQFSA-HS-THMLAFGSADYRTYCFD WD 5 908-945 -KAPW---------CVLGGHEKAVSYVKF-L-DS-E-TLVSASTDNTLKLWD WD 6 957-995 -NACS---------LTLNGHTNEKNFVGLSV-SD-S-YIACGSETNEVYAYH WD40 Template TGECL---------RTLSGHTSGVTSVSFSP-DG-K-RLVSGSEDGTIKVWD |
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