Input parameters:

  Query = CsaV3_3G023780 (Len=450)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G023780, Len=450):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASLNSPDSSPPNISFSINQTRKSTTTSSSATGHRLYRSISTKEPSFSQFPFTPPHLNNNCPSLPQSLHNSPTSSPLHPT 80  
WD40-rpts                                                    (___________________WD 1__________

Query       81 AAAAAAKLSDHLISHRCVSSVLKKDGQILSIAMFNDILYTGSDSNLVRIWKLPDFTECGQLKTKASMAVALQVSHDKVYA 160 
WD40-rpts      _________)    (________________WD 2_______________)   (________________WD 3_____

Query      161 AYSDCKIRVWRRSWDRGLKHSRLATIPATGSYVRSYISGKDKMMKHMGPITSLAINISDDILYSSSLDKSVKVWRISDFK 240 
WD40-rpts      __________)                             (_______________WD 4______________)   (_

Query      241 CIETIQAHSEPINAIIASADGLLYSASDDATIKVWRRNFSRSDHPPHSLVITLPANFSPVKTLTLDTNSTLLYGGCSDGY 320 
WD40-rpts      _______________WD 5________________)          (_________________WD 6____________

Query      321 LHFWLKGWFSGQLQYGGALQGHTHAVMCLASVGKYVVSGSADSTCRVWARDEVDCQLHTCLAVLVGHRGPVRCVAAFFGS 400 
WD40-rpts      ____)       (________________WD 7_______________)                (______________

Query      401 GSEEAVEEGEGGCTICSGSLDGVLKVWRVTCTSNGTPNQDLQNGTDYFDL 450 
WD40-rpts      _____WD 8__________________)                      

8 WD40-repeats found in QUERY=CsaV3_3G023780 (Len=450):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    47-90       7.48  423.61  0.00012       17.5%     21.99
  WD 2:  Seg  6    95-131      6.79  395.20  0.00029       17.5%     54.89
  WD 3:  Seg 10   135-171      6.98  403.13  0.00023       20.0%     52.59
  WD 4:  Seg 16   201-235      8.37  460.28  3.9e-05       25.0%     47.25
  WD 5:  Seg 19   239-276      8.85  480.26  2.1e-05       37.5%     53.50
  WD 6:  Seg 23   287-325      8.43  462.83  3.6e-05       22.5%     55.42
  WD 7:  Seg 27   333-369      7.54  426.13  0.00011       37.5%     47.59
  WD 8:  Seg 32   386-428      6.31  375.28  0.00054       25.0%     47.83

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-90     FSQ---FPFTPPHLNNNCPSLPQSLHNSPTSSPLHPTAAAAAAKLSD
   WD 2   95-131    -HR---C----VSSVLKKDGQILSIAMFND--ILYTGSDSNLVRIWK
   WD 3  135-171    -FT---E----CGQLKTKASMAVALQVSHDK--VYAAYSDCKIRVWR
   WD 4  201-235    ------------DKMMKHMGPITSLAINISDDILYSSSLDKSVKVWR
   WD 5  239-276    -FK---C----IETIQAHSEPINAIIASADG-LLYSASDDATIKVWR
   WD 6  287-325    -HS---L----VITLPANFSPVKTLTLDTNSTLLYGGCSDGYLHFWL
   WD 7  333-369    -LQ---Y----GGALQGHTHAV--MCLASVGKYVVSGSADSTCRVWA
   WD 8  386-428    GHRGPVR----CVAAFFGSGSEEAVEEGEGGCTICSGSLDGVLKVWR

   WD40 Template    TGE---C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD