Input parameters:

  Query = CmaCh06G006620 (Len=299)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh06G006620, Len=299):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSD 80  
WD40-rpts      (_____________________WD 1_____________________)(_____________________WD 2______

Query       81 LIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMT 160 
WD40-rpts      ______________)   (________________WD 3________________)(__________________WD 4_

Query      161 GEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240 
WD40-rpts      ________________)   (_________________WD 5________________)   (_________________

Query      241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKI 299 
WD40-rpts      WD 6________________)   (_______________WD 7______________)

7 WD40-repeats found in QUERY=CmaCh06G006620 (Len=299):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-48       9.09  490.30  1.5e-05       40.0%     54.78
  WD 2:  Seg  5    49-95       7.61  428.95  0.00010       27.5%     54.54
  WD 3:  Seg  9    99-136      7.90  441.04  7.1e-05       20.0%     58.14
  WD 4:  Seg 13   137-177      7.03  405.14  0.00022       12.5%     54.19
  WD 5:  Seg 17   181-219      9.81  520.02  6.1e-06       30.0%     54.67
  WD 6:  Seg 21   223-261      9.32  499.63  1.1e-05       30.0%     58.42
  WD 7:  Seg 24   265-299      4.01  280.34  0.01034       15.0%     45.36

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-48     MEESTPAFKNLYSREYQ-GHKKKVHSVAWNCT-GMKLASGSVDQTARVWH
   WD 2   49-95     IEP--HGHGKVKDVELK-GHTDSVDQLCWDPKHSDLIATASGDKTVRLWD
   WD 3   99-136    -GK--------CSQQAE-LSGE-NINITYKPD-GTHIAVGNRDDELTILD
   WD 4  137-177    VRK--------FKPVHKRKFNYEVNEIAWNMT-GEMFFLTTGNGTVEVLA
   WD 5  181-219    -LR--------PIETLM-AHTAGCYCIAIDPV-GGYFAVGSADSLVSLWD
   WD 6  223-261    -ML--------CVRTFT-KLEWPVRTISFNHT-GEYIASASEDLFIDISS
   WD 7  265-299    -GR--------TVHQIP-CRAA-MNSVEWNPK-HNLLAYAGDDKNKI---

   WD40 Template    TGE--------CLRTLS-GHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD