Input parameters:

  Query = CmaCh08G006830 (Len=934)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh08G006830, Len=934):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPAWKWDPPSPAIITVDYDLIIITPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTE 80  
WD40-rpts                                 (_________________WD 1________________)   (__________

Query       81 LPVRSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQI 160 
WD40-rpts      _______WD 2________________)   (_________________WD 3________________)(_________

Query      161 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 240 
WD40-rpts      __________WD 4___________________)(___________________WD 5___________________)  

Query      241 TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKGSRRVVIGYDEGTIMV 320 
WD40-rpts       (_________________WD 6________________)   (_________________WD 7_______________

Query      321 KLGREVPVASMDNTGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQNLRHNPNGRFVVVCGDGEYI 400 
WD40-rpts      _)(__________________WD 8_________________)  (_________________WD 9_____________

Query      401 IYTALAWRNRSFGSALEIVWSSEGEYAARESTSKIKIFTKNFQEKKSIRPAFSAEHIYGGTLLAMCSNDFICFYDWAECR 480 
WD40-rpts      ___)                                                                       (____

Query      481 LIRRIDVNVKNLYWADSGDLVAISSDSAFYILKYNRDVVSSYLDSGRSVDEQGIEDAFELLYETNERVRTGLWVGDCFIY 560 
WD40-rpts      ____________WD10________________) (_________________WD11_________________)      

Query      561 NNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASHSRVYLIDKEFNVVGYTLLLSLIEYKTLVMRGDLERANEILPLIPKE 640 
WD40-rpts                                                                                      

Query      641 HHNSVARFLESRGMIEEALEVATDPDYRFELAIQLGRLDVAKEIATAVHSESKWKQLGELAMSSGKLEMAEECLKFAMDL 720 
WD40-rpts                                                                                      

Query      721 SGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFTLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKD 800 
WD40-rpts                                                                                      

Query      801 LNKVSPKAADSLADPEEYPNLFDDWQLAVSVESKFSETRGVYPPAVEYANQADRSHATLVEAFRNMHVDEEELLENGDSN 880 
WD40-rpts                                                                                      

Query      881 LENGDEETEEHQNGEDSQEEPVVVDADSTDGAVLVNGNEADEEWGTNNEGTQSA 934 
WD40-rpts                                                            

11 WD40-repeats found in QUERY=CmaCh08G006830 (Len=934):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    28-66       6.51  383.68  0.00042       25.0%     52.30
  WD 2:  Seg  8    70-108      6.74  393.00  0.00031       17.5%     55.99
  WD 3:  Seg 12   112-150      8.15  451.37  5.1e-05       27.5%     57.33
  WD 4:  Seg 16   151-194      7.83  438.01  7.8e-05       37.5%     56.82
  WD 5:  Seg 20   195-238      7.82  437.50  7.9e-05       42.5%     49.86
  WD 6:  Seg 24   242-280      9.95  525.59  5.1e-06       42.5%     56.00
  WD 7:  Seg 28   284-322      5.65  348.13  0.00127       25.0%     53.87
  WD 8:  Seg 32   323-363      3.86  274.27  0.01247        7.5%     34.13
  WD 9:  Seg 36   366-404      4.25  290.39  0.00758       12.5%     48.34
  WD10:  Seg 47   476-513      2.78  229.56  0.04903       17.5%     42.98
  WD11:  Seg 50   515-554      4.72  309.71  0.00417       10.0%     30.94

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-66     -L--E---I-KRKLAQRSERVKSVDLHP-TEPW--ILASLYSGTVCIWN
   WD 2   70-108    -Q--I---M-VKSFEVTELPVRSAKFIV-RKQW--VVAGADDMFLRVYN
   WD 3  112-150    -M--D---K-VKVFEAHTDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 4  151-194    WE--KGWVC-TQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN
   WD 5  195-238    LGSPD---P-NFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  242-280    -K--S---C-VQTLEGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
   WD 7  284-322    -Y--R---L-ENTLNYGLERVWAIGYIK-GSRR--VVIGYDEGTIMVKL
   WD 8  323-363    GR--E---VPVASMDNTGKIIWAKHNEI-QTVN--IKSVGADYEVTDGE
   WD 9  366-404    -P--L---A-VKELGTCDLYPQNLRHNP-NGRF--VVVCGDGEYIIYTA
   WD10  476-513    WA--E---C--RLIRRIDVNVKNLYWAD-SGDL--VAISS-DSAFYILK
   WD11  515-554    NR--D---V-VSSYLDSGRSVDEQGIED-AFEL--LYETNERVRTGLWV

   WD40 Template    TG--E---C-LRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD