WDRR: WD40 Repeat Recognition
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JobID: Q66AL1659460328    Submitted: 2022-08-03 01:12:08

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Job status:  [Done] Total run time: 79790809 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = CmaCh02G003700 (Len=1311)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (CmaCh02G003700, Len=1311): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGFRIVVKKMLTKFETKSNRVKGLSFHSRRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHKSQPLFVSGG 80  
WD40-rpts             (_________________WD 1_________________)   (_________________WD 2________

Query       81 DDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 160 
WD40-rpts      ________)   (_________________WD 3________________)   (_________________WD 4____

Query      161 VSASLDQTVRVWDIGALRKKTVSPADDVLRLSQMNADLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 240 
WD40-rpts      ____________)                              (_________________WD 5_______________

Query      241 WRMNDTKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRIWDATKRTGLQTFRREHDRFWILTAHPEMNLLAAGHD 320 
WD40-rpts      _)(___________________WD 6___________________)   (________________WD 7__________

Query      321 SGMIVFKLERERPAFATSGDSLFYVKDRFLRLYEFSTQKDSQVIPVRRPGSTSLNQSPRTLSFSPTENTVLICSDLDGGC 400 
WD40-rpts      ______)                                                                         

Query      401 YEFYTITKDSFGRSDSFQDAKRGLGGSAVFVARNRFAVLDKSHNQVMLKNLKNEVVKKVPIPITADAIFYAGTGNLLCRA 480 
WD40-rpts                                                                                      

Query      481 EDRVVIYDLQQRLILGDLQTPFVKYVVWSNDMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDSGVFIYTTLNH 560 
WD40-rpts              (_________________WD 8_________________)                                

Query      561 IKYCLPNGDSGIIKTLDVPIYITKVSGNALFCLDRDGTVKSFTIDATEYMFKLSLLKKRFDHVMSMIRNSQLCGQAMIAY 640 
WD40-rpts                                                                                      

Query      641 LQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYL 720 
WD40-rpts                                                                                      

Query      721 ITGNTAKLSKMLKIAEVKNDVMGQFHNALYLGDVRERIKILENVGHLPLAYITASTHGLHDVAERLAAELGNDIPSLPEG 800 
WD40-rpts                                                                                      

Query      801 KTGSLLLPPTPVMCGGDWPLLRVMKGIFEGGLDNVGGGRADDDDDEVAEGDWGEELDVVDVVDGLQNGDVTAILEDGEGA 880 
WD40-rpts                                                                                      

Query      881 EENEEEGGWDLEDLELPPEADTPKVSVSSRSSVFVAPTPGLPAYQAWIQRSSLAAEHVAAGNFDTAMRLLNRQLGIKNFA 960 
WD40-rpts                                                                                      

Query      961 PLRSIFLDLHAGSQTYLRAVSSAPIVSMAIERGFSESINTNAKGSPVLIFSFTQLEEKLKAGYKATTSGKFAEALRLFLG 1040
WD40-rpts                                                                                      

Query     1041 ILHTIPLIVVESRREVDEVKELIIIVKEYVLGLQMELKRRELKDNPVRQMELAAYFTHCNLQMPHLRLALLNAMTVCYKA 1120
WD40-rpts                                                                                      

Query     1121 KNLASAANFARRLLETNPSIENQAKTARQVLQAAERNMTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRCIW 1200
WD40-rpts                                                                                      

Query     1201 FTLFSHPKSMIALRELHLFAMISLIFPTTGALLLRVFMSVLVEVDCDITVIKEDMTSYMLMFAGPSRRILVVCYAARGFC 1280
WD40-rpts                                                                                      

Query     1281 LLLTMILKRYVLMRMVASIVHAKACLSDMRF 1311
WD40-rpts


8 WD40-repeats found in QUERY=CmaCh02G003700 (Len=1311):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       5.33  334.88  0.00191       20.0%     57.24
  WD 2:  Seg  5    51-89       7.39  420.04  0.00014       32.5%     56.77
  WD 3:  Seg  9    93-131      8.43  462.98  3.6e-05       37.5%     57.38
  WD 4:  Seg 13   135-173      8.92  482.95  1.9e-05       40.0%     56.27
  WD 5:  Seg 18   204-242      7.40  420.35  0.00013       32.5%     56.35
  WD 6:  Seg 22   243-286      8.41  461.99  3.7e-05       40.0%     54.05
  WD 7:  Seg 26   290-327      3.23  248.09  0.02789       17.5%     56.54
  WD 8:  Seg 44   489-528      3.50  259.15  0.01986       20.0%     43.76
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    8-47     VKKM----LTKFETKSNRVKGLSFHSRRPWILASLHSGVIQLWD
   WD 2   51-89     -GTL----IDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWN
   WD 3   93-131    -HRC----LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN
   WD 4  135-173    -RTC----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD
   WD 5  204-242    -AVV----KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR
   WD 6  243-286    MNDTKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRIWD
   WD 7  290-327    -RTG----LQTFRREHDRFWILTAHPEMNLLAAGH-DSGMIVFK
   WD 8  489-528    LQQR----LILGDLQTPFVKYVVWSNDMESVALLSKHAIIIANK

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD
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Last modified: 09 Jan 2019