Input parameters:

  Query = CsaV3_1G014630 (Len=624)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G014630, Len=624):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEPLNGNGNVDSASAKAETEEDPAIGPGPAPRSRPKRPLQFEQAYLDTIPSANMYEKSYMHRDVVTHVAVSSADFFITG 80  
WD40-rpts                                                      (__________________WD 1_________

Query       81 SDDGHLKFWKKKPIGIEFAKHFRSHLGPIEGIAVSVDGLLCCTISNDHSVKIYDVVNYDMMVMIRLPFIPGAAEWVYKQG 160 
WD40-rpts      _________) (___________________WD 2__________________)                          

Query      161 DVKARLAISDRNSSFVHIYDARSGSNEPIASREVHLGPVKVMKYNHVFDSVISADARGLIEYWTPDTLQFPENNVNFKLK 240 
WD40-rpts                                                              (_______________________

Query      241 SDTNLFEIVKCKTTVSAIEVSPDGKQFSITSPDRRIRVFWYRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 320 
WD40-rpts      ______WD 3_____________________________)                                        

Query      321 VEKEIEKAESAPQPNAVFDESSNFLIYTSLLGIKVVNLHTNKVARILGKVENNDRFLRIALYQGDKSSKKVRKIPSAAAN 400 
WD40-rpts                                                                                      

Query      401 ANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPDNVILHTTMGDI 480 
WD40-rpts                                                                                      

Query      481 HMRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANA 560 
WD40-rpts                                                                                      

Query      561 GPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQTIEKVKTDKADKPYQDVKILNVSVPKP 624 
WD40-rpts                                                                      

3 WD40-repeats found in QUERY=CsaV3_1G014630 (Len=624):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    49-90       3.95  277.68  0.01122       30.0%     32.93
  WD 2:  Seg  4    92-134      5.94  359.99  0.00088       22.5%     54.84
  WD 3:  Seg 15   217-280      4.19  287.80  0.00821       32.5%     47.71

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-90     TI---------------PSANMYEKSYMHRD---------VVTHVAVSSAD-FFITGSDDGHLKFWK
   WD 2   92-134    KP------------IGIEFAKHFRS---HLG---------PIEGIAVSVDGLLCCTISNDHSVKIYD
   WD 3  217-280    RGLIEYWTPDTLQFPENNVNFKLKS---DTNLFEIVKCKTTVSAIEVSPDGKQFSITSPDRRIRVFW

   WD40 Template    TG---------------ECLRTLSG---HTS---------GVTSVSFSPDGKRLVSGSEDGTIKVWD