WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: Q1UXN1659461554 Submitted: 2022-08-03 01:32:34 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79790177 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh04G029350 (Len=1684) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh04G029350, Len=1684): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTSGDPSMALLAASAGDTVKLFDVSAYSNDLGDPCTLSYTPSPGYQVNSVKWNHTNLVVASAGDDKKISLWRKNGQSMGT 80
WD40-rpts (_____________________WD 1_____________________)
Query 81 IPIAGSDGGDNIEESIFSISFSNKVSRYMCTGGSGHVVRIWDLQRKRCIKWLRGHTNTITGAMYNCKDEHLASISLSGDL 160
WD40-rpts (________________________WD 2____________________
Query 161 LLHNLASGARAAELKDPNEQVLRVLDYSRISRHLLVTAGDDGTVHLWDTTGRNPKVSWQKQHSAPTAGISFSPSNDKTLA 240
WD40-rpts ___) (__________________WD 3_________________) (_________________WD 4______
Query 241 SVGLDKKLYTYDSGSRRPSSFIAYEAPFSSMAFRDDGLILAAGTSNGRVVFYDVRGKPEPYIVLRAYSSSEVHEMLFIIS 320
WD40-rpts ___________)(__________________WD 5_________________)
Query 321 FFPSPALLCFVLFNCVSLYHYLLLLAVAIEMVFICSCAYEVQTILPESRFISSLSVLFVSSVDCMLGNCTADVALLGGAI 400
WD40-rpts
Query 401 EDSILMPDPLPSVTTSTVALSTTTSSSRNPGHSGLTFEASLTETCSTISTAEETPHRSHLRPGGSLTRLHAPRSNYNFKD 480
WD40-rpts
Query 481 DMEVFSPLVDVQPITPSLDKLWDDQNGLKKDHPFDKKPLPLLFPSSSRRISSIEDGPSDHPIFNWKSSSSKQDDSRSSSG 560
WD40-rpts
Query 561 QLGSTPAPTLNSKNEDSSITPPEAWGGEKLSDKFAQLRQPATLPSRFGMLASSSSSQTSSSMISGLQDPSSSISQSSITS 640
WD40-rpts
Query 641 LTNLNFSYPNMRTKDVISQEVSLSIPEHFSTTAASLSLGTRGTIGLSNQDSPRTTTMTLPRRFSTYAERLSTTSSFSDGL 720
WD40-rpts
Query 721 PVGVGSPKTKKMGSETREEVLNNLSKFDTLSVTESGILPAMNGGPLQPQKALQTDAQQGNSFTLQLFQRTLEETLDSFQR 800
WD40-rpts
Query 801 SIHDDMRNLHLEILRQFHMQEMEMSSVTSSMLKNQAELIKEVNVVIGHFVASIRRLLLISIFPTETNTRWGFDDPAASME 880
WD40-rpts
Query 881 TFPPINGGDRGRGYQTLEGPSDSQQQTSNDWKGVFSVTSYTQYFNVDSDIVLNRLISSLYPIGGDFSSKIDANPDLYGLV 960
WD40-rpts
Query 961 WITTTLVFVLAALGNCATFLMQKRSDHATAWSFDVSYVNVAAGSVYGYAIVVPMAFYFSLQYLGSNSSLIRFWCLWGYSL 1040
WD40-rpts
Query 1041 FIFILASIKELNSQEYEVILVSSGAVGIGRQRLRYRKLVNSSFADLQKPQVDLDGKACAAVGQNSLMALYDTLFSQLDVS 1120
WD40-rpts
Query 1121 SAQLLVTDNDFRDKDFRRQLSDTVKSLLSLKVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLVLLSD 1200
WD40-rpts
Query 1201 VDGLYSGPPSDPHSKLIHTYVKERHQGEITFGDKSRVGRGGMTAKVKAAVGAAYAGIPVVITSGYAPENILKVLKGDRIG 1280
WD40-rpts
Query 1281 TLFHQDAHLWAPQKDVGARDMAVAARESSRRLQAISSQERRKILLDVADALETNEKLIRTENEADVAEAQQTGYERALIS 1360
WD40-rpts
Query 1361 SLANSIRTLANMEDPIGRVLKKTEVSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEARRSNAI 1440
WD40-rpts
Query 1441 LHKIITEAIPDSVGGTLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKNSTKIPVLGHADGICHVYVDKSADLEM 1520
WD40-rpts
Query 1521 AKRIVLDAKVDYPAACNAMETLLVHKDLVHTGMLNELVVNLRIEGVTLYGGPKASNLLNIPEARTAHTDCIVTEDDKVAE 1600
WD40-rpts
Query 1601 IFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGSGQVVNGDKGVIYTHKDIKIES 1680
WD40-rpts
Query 1681 HVVD 1684
WD40-rpts
 5 WD40-repeats found in QUERY=CmaCh04G029350 (Len=1684): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 25-72 3.79 271.24 0.01369 20.0% 24.09 WD 2: Seg 7 112-164 5.15 327.40 0.00241 27.5% 37.23 WD 3: Seg 11 168-208 4.68 307.90 0.00441 30.0% 38.49 WD 4: Seg 14 213-252 5.37 336.45 0.00182 25.0% 35.47 WD 5: Seg 18 253-293 4.92 317.76 0.00325 22.5% 31.10Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 25-72 SAYS-------NDL------G-DPCTLSYTPSPGYQVNSVKWNH-TNLV--VASAGDDKKISLWR WD 2 112-164 GGSGHVVRIWDLQRKRCIKWL-RGHTNT--------ITGAMYNC-KDEH--LASISLSGDLLLHN WD 3 168-208 -GAR-------AAE------L-KDPNEQ--------VLRVLDYS-RISRHLLVTAGDDGTVHLWD WD 4 213-252 -NPK-------VSW------Q-KQHSAP--------TAGISFSPSNDKT--LASVGLDKKLYTYD WD 5 253-293 SGSR-------RPS------SFIAYEAP--------FSSMAFRD-DGLI--LAAGTSNGRVVFYD WD40 Template TGEC-------LRT------L-SGHTSG--------VTSVSFSP-DGKR--LVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |