Input parameters:

  Query = CmaCh18G002230 (Len=440)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh18G002230, Len=440):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPRTTKVDCPGCPPLRALTFDVLGLVKVIQAQGKDSEIPKVVERWGEPDYSKSVLAASLVDRKFDPLLAVARKNGLIEVL 80  
WD40-rpts                                                   (_______________WD 1_______________

Query       81 NPLNGNLHVAISDNTDTSPPKDDAIIGMHLFAKDELALASRRCTLLSCTKKGNASMRSIDFSSSSSEDISTNIVKTWKVC 160 
WD40-rpts      )   (_________________WD 2________________)(_______________WD 3______________)  

Query      161 GSGDVLCSKVDGSETHALFGGKGVEVNTWNLEQCTKIWTAKAPKKNSLGIFTPTCFTSVTFLSKDDHRKFAAGTSSHQVR 240 
WD40-rpts      (_________________WD 4________________)   (__________________WD 5_______________

Query      241 LYDISAQKRPVISFDFRETPIKALAEDVDGNTIFVGNATGDLASFDIRNGKLLGCFLGKCSGSIRSIARHPEFPIIASCG 320 
WD40-rpts      __)(___________________WD 6__________________)   (_________________WD 7_________

Query      321 LDSYVRFWDIKTRQLLSAVFLKQHLNGVVFDSHFVGEDTTHSAVDSIQQDIEISQTFSEEEHTPQKRKKASKEDGEGKKR 400 
WD40-rpts      ________)(____________________WD 8____________________)_______________WD 9______

Query      401 KGASKENKKCKKKSHGETEKRLVLVLIYSVGRYCEKSEGK 440 
WD40-rpts      ___________)                            

9 WD40-repeats found in QUERY=CmaCh18G002230 (Len=440):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    46-81       6.44  380.61  0.00046       12.5%     35.78
  WD 2:  Seg  6    85-123      3.11  243.19  0.03240       15.0%     -2.16
  WD 3:  Seg  9   124-158      5.88  357.53  0.00095       20.0%     42.71
  WD 4:  Seg 13   161-199      7.44  421.91  0.00013       15.0%     56.75
  WD 5:  Seg 16   203-243      7.01  404.36  0.00022       17.5%     51.57
  WD 6:  Seg 20   244-286      8.25  455.54  4.5e-05       12.5%     58.95
  WD 7:  Seg 24   290-329      8.06  447.60  5.8e-05       27.5%     60.13
  WD 8:  Seg 28   330-375      6.08  365.87  0.00073       20.0%     52.36
  WD 9:  Seg 31   373-412      6.04  364.31  0.00077       15.0%     32.55

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   46-81     -----------GEPDYSKSVL-A--ASLVD--RKFDP-LLAVARKNGLIEVLN
   WD 2   85-123    -G---N----LHVAISDNTDT-S--PPKDD--AIIGM-HLFAKDELALASRRC
   WD 3  124-158    T---------LLSCTKKGNAS-M--RSIDF--SSSSS-EDIS---TNIVKTWK
   WD 4  161-199    GS---G----DVLCSKVDGS--E--THALF--GGKGV-EVNTWNLEQCTKIWT
   WD 5  203-243    -P---K----KNSLGIFTPTC-F--TSVTFLSKDDHR-KFAAGTSSHQVRLYD
   WD 6  244-286    ISAQKR----PVISFDFRETP-I--KALAE--DVDGN-TIFVGNATGDLASFD
   WD 7  290-329    -G---K----LLGCFLGKCSGSI--RSIAR--HPEFP-IIASCGLDSYVRFWD
   WD 8  330-375    IK---TRQLLSAVFLKQHLNG-VVFDSHFV--GEDTT-HSAVDSIQQDIEISQ
   WD 9  373-412    -I---S----QTFSEEEHTPQ-K--RKKAS--KEDGEGKKRKGASKENKKCKK

   WD40 Template    TG---E----CLRTLSGHTSG-V--TSVSF--SPDGK-RLVSGSEDGTIKVWD