Input parameters:

  Query = CmaCh19G001230 (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh19G001230, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESSSVLIGSKGLIRKHEFVRIIIQCLYSFGYQKSALCLEAESGISYKSNDFKLLESQIFSGNWYGCIDTISGIKDLTDE 80  
WD40-rpts                                                                                      

Query       81 VRVSALFLVLKHCLLEYSNCGDDASALAMLRKEAPMFRFSRDKIHKLAYSIFTSKNMNMDYSNDSVIHELRKKLLRDLEK 160 
WD40-rpts                                                                                      

Query      161 ALPPPTCLPDRRLEQLVETTVVAQIDSCMYHNFSGAVSIYEDHCCGRDQIPTETIQILAEHKNEVWYVQFSNNGEYLASS 240 
WD40-rpts                                                         (_________________WD 1_______

Query      241 SSDCSAIIWKVLEDGKLTLRHILRSHQSQVSFVAWSPDDTKLLTCGHAEVLKLWDVETGTCKHTFEDHGFTVSSCAWFPD 320 
WD40-rpts      _________)(____________________WD 2___________________)   (__________________WD 

Query      321 SKRLVCGSADPEKGIHLWDCDGNEIKAWRGTRMPKILDLAVTPNGENLISIFSDKEIRILNLESNAERVIAEEHSISSLS 400 
WD40-rpts      3_________________)   (_________________WD 4________________)(_________________W

Query      401 ISVDGKFFIVNLNNQEIHMWDVAGEWQQPLKYTGHQQNKYVIRSCFGGVNSAFIASGSENSEVYIWSRQSSKPIEVLSGH 480 
WD40-rpts      D 5_________________)    (__________________WD 6__________________)   (_________

Query      481 STTVNCVSWNPKRPKMLASASDDQTIRIWGPASSKNVKPGQSS 523 
WD40-rpts      ________WD 7_________________)             

7 WD40-repeats found in QUERY=CmaCh19G001230 (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   212-250      9.18  494.05  1.4e-05       32.5%     54.01
  WD 2:  Seg  8   251-295      8.91  482.82  1.9e-05       32.5%     49.87
  WD 3:  Seg 12   299-339      8.73  475.13  2.5e-05       45.0%     57.20
  WD 4:  Seg 16   343-381      8.17  452.32  5.0e-05       17.5%     59.50
  WD 5:  Seg 20   382-421      8.08  448.52  5.6e-05       22.5%     52.47
  WD 6:  Seg 24   426-467      6.81  395.98  0.00029       20.0%     55.83
  WD 7:  Seg 28   471-510      8.73  475.15  2.5e-05       40.0%     54.42

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  212-250    -TE-----TIQILAEHKNE---VWYVQFSNN-GEYLASSSSD--CSAIIWK
   WD 2  251-295    VLEDGKLTLRHILRSHQSQ---VSFVAWSPD-DTKLLTCGHA--EVLKLWD
   WD 3  299-339    -GT-----CKHTFEDHGFT---VSSCAWFPD-SKRLVCGSADPEKGIHLWD
   WD 4  343-381    -NE-----IKAWRGTRMPK---ILDLAVTPN-GENLISIFSD--KEIRILN
   WD 5  382-421    LES-----NAERVIAEEHS---ISSLSISVD-GKFFIVNLNN--QEIHMWD
   WD 6  426-467    -WQ-----QPLKYTGHQQNKYVIRSCFGGVN-SAFIASGSEN--SEVYIWS
   WD 7  471-510    -SK-----PIEVLSGHSTT---VNCVSWNPKRPKMLASASDD--QTIRIWG

   WD40 Template    TGE-----CLRTLSGHTSG---VTSVSFSPD-GKRLVSGSED--GTIKVWD