Input parameters:

  Query = 2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=402)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2AQ5_A_PDBID_CHAIN_SEQUENCE, Len=402):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80  
WD40-rpts                        (____________________WD 1___________________)(________________

Query       81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 
WD40-rpts      _____WD 2____________________)          (_________________WD 3_________________)

Query      161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 
WD40-rpts         (__________________WD 4_________________)   (___________________WD 5_________

Query      241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 
WD40-rpts      __________)(____________________WD 6___________________)    (__________________W

Query      321 YMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPK 400 
WD40-rpts      D 7__________________)   (_________________WD 8________________)                

Query      401 SR 402 
WD40-rpts        

8 WD40-repeats found in QUERY=2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=402):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    19-63       3.00  238.73  0.03712       17.5%     46.81
  WD 2:  Seg  7    64-110      8.05  447.07  5.9e-05       35.0%     50.13
  WD 3:  Seg 11   121-160      7.55  426.70  0.00011       40.0%     54.57
  WD 4:  Seg 15   164-204      7.83  438.03  7.8e-05       27.5%     57.41
  WD 5:  Seg 19   208-251      5.29  333.24  0.00201       25.0%     47.48
  WD 6:  Seg 23   252-296      5.79  353.82  0.00106       30.0%     45.23
  WD 7:  Seg 27   301-342      3.34  252.80  0.02413       20.0%     42.14
  WD 8:  Seg 30   346-384      3.01  239.11  0.03668        7.5%     17.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-63     AKA------DQCYEDVRVS----QTTW--DSGFCA--VNP-KFMA-L-ICEA---SG-GGAFLVLP
   WD 2   64-110    LGKTGRVDKNV----PLVC----GHTA--PVLDIA--WCPHNDNV-I-A-SG---SE-DCTVMVWE
   WD 3  121-160    -RE------PV----ITLE----GHTK--RVGIVA--WHP-TAQNVL-L-SA---GC-DNVILVWD
   WD 4  164-204    -GA------AV----LTLG--PDVHPD--TIYSVD--WSR-DGAL-I-C-TS---CR-DKRVRVIE
   WD 5  208-251    -GT------VV----AEKD----RPHE--GTRPVHAVFVS-EGKI-L-T-TGFSRMS-ERQVALWD
   WD 6  252-296    TKH------LE----EPLSLQELDTSS--GVLLPF--FDP-DTNI-VYL-CG---KG-DSSIRYFE
   WD 7  301-342    -AP------FL----HYLS----MFSSKESQRGMG--YMP-KRGL-E-V-NK---CEIARFYKLHE
   WD 8  346-384    -EP------IA----MTVP----RKSD--LFQEDL--YPP-TAGP-D-P-AL---TA-EEWLGGRD

   WD40 Template    TGE------CL----RTLS----GHTS--GVTSVS--FSP-DGKR-L-V-SG---SE-DGTIKVWD