WDRR: WD40 Repeat Recognition
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JobID: PWMYR1659460993    Submitted: 2022-08-03 01:23:13

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Job status:  [Done] Total run time: 79755376 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = CmaCh04G013010 (Len=1134)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (CmaCh04G013010, Len=1134): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDRIEDDEREALAGLSSIPPPRKSHSYSQQLRAATDQKRQQMRKHSLDEDQIPKLMDSCHASTDDDFFPYSTTSAVKGE 80  
WD40-rpts                                         (________________________WD 1________________

Query       81 ENPSQRLDQNLCMDGGGGQEDPRQSQALAEFVGSGGSTGVFKVPIRASVHPGRPTCLELRPHPLRETQVGKFLRNIACTE 160 
WD40-rpts      _______)                                                                        

Query      161 TQLWAGQECGVRFWNFENAYEGGSGLGGRVRRGDEDAAPFHESTNTSPTTCLIVDNGNRLVWSGHKDGKIRSWKMDQSLD 240 
WD40-rpts                     (___________________________WD 2__________________________)      

Query      241 EMPFKEGLSWQAHRGSVLSMTLTTYGDLWTGAEGGIIKVWPWEAIEKSLCLSSGERHMAALLVERSYVDLRSQVTVNGVC 320 
WD40-rpts         (________________WD 3________________)   (_________________WD 4______________

Query      321 SISSQDVKCVLADNVKAKVWCAGALSFSLWDAQTRELVKVFNVDGQTETRVDMLTSPQDQTMEDEMKVKFVSTAKKEKPQ 400 
WD40-rpts      __)                            (___________________WD 5___________________)     

Query      401 GFLQRSRNAIMGAADAVRRVAKGAGAFTEDIKRVEAIMLAKDGMIWSGCTNGMLVQWDGNGNRLQDFNHHPYAVQCFCAF 480 
WD40-rpts                            (_______________WD 6_______________)  (________________WD 

Query      481 GTRIYVGYVSGVIQIVDLEGNLVAGWVAHSSPVLKMAVGADYVYSLASHGGIRGWNMTSPGPIDNIVRTELVAREAIYTR 560 
WD40-rpts      7_______________)  (________________WD 8_______________)                        

Query      561 KQNVRMLVGTWNVGQGRASHEALMAWLGSTVSDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWIDTIGKALD 640 
WD40-rpts                                                                                      

Query      641 EGTTFERMGSRQLAGLLISLWVKKNLRTHVGDVDAGAVPCGFGRAIGNKGGVGLRIRVYDRIICFVNCHLAAHLEAVNRR 720 
WD40-rpts                                                                                      

Query      721 NADFDHIYRNMVFNRSSNLLNNVAGMVPYLFLSCSLAFSTYLFWLLYSSGLPLALSVAAGVSTAVHTLRATNVAAVNPEE 800 
WD40-rpts                                                                                      

Query      801 PKPELSDADMVVFLGDFNYRLFGISYDEARDFVSQRCFDWLREKDQLRAEMKSGKVFQGMREALIRFPPTYKFERHRPGL 880 
WD40-rpts                                                                                      

Query      881 AGYDAGEKKRIPAWCDRVIYRDTRSAPVTESSLECPVVSSVLLYEAVMEVTDSDHKPVRCKFNIQICHADRSVRRREFGD 960 
WD40-rpts                                                                                      

Query      961 IIKSNEKVKSIFEELLYIPETIVSTNNIVLQNQESFVLCITNKCLKDVATFRIISEGQPPVKDEGEVRDYHPRGAFGFPR 1040
WD40-rpts                                                                                      

Query     1041 WLEVSPAAGIIKPEQSVEITVNHEESRSQEESVDGIPQNWWCEDTRDKEVMLTVTIQGSCSTRSFSHQVRVRHCFSNKAA 1120
WD40-rpts                                                                                      

Query     1121 APIMESKSNSTKKP 1134
WD40-rpts


8 WD40-repeats found in QUERY=CmaCh04G013010 (Len=1134):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    36-88       4.71  309.38  0.00421       17.5%     -6.59
  WD 2:  Seg  6   176-234      5.84  356.03  0.00099       27.5%     42.72
  WD 3:  Seg  9   244-281      6.68  390.80  0.00034       30.0%     44.34
  WD 4:  Seg 13   285-323      3.47  257.83  0.02068       12.5%     34.32
  WD 5:  Seg 19   352-395      4.54  302.40  0.00522       10.0%     24.72
  WD 6:  Seg 24   423-458      5.63  347.37  0.00130       20.0%     39.21
  WD 7:  Seg 27   461-497      6.12  367.66  0.00069       27.5%     46.35
  WD 8:  Seg 31   500-536      4.87  315.65  0.00347       20.0%     39.12
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   36-88     TDQ----KRQQMRK-------------------HSLDEDQIPKLMDSCHASTDDDFFPYSTTSAVKGEENPSQRLD
   WD 2  176-234    FEN----AYEGGSGLGGRVRRGDEDAAPFHESTNT-------------SPTTCLIVDNGNRLVWSGHKDGKIRSWK
   WD 3  244-281    -FK----EGLSWQA-------------------HR-------------GSVLSMTLTTYGD-LWTGAEGGIIKVWP
   WD 4  285-323    -IE----KSLCLSS-------------------GE-------------RHMAALLVERSYVDLRSQVTVNGVCSIS
   WD 5  352-395    AQTRELVKVFNVDG-------------------QT-------------ETRVDMLTSPQDQTMEDEMKVKFVSTAK
   WD 6  423-458    -------GAGAFTE-------------------DI-------------KRVEAIMLAKDG-MIWSGCTNGMLVQWD
   WD 7  461-497    -GN----RLQDFNH-------------------HP-------------YAVQC--FCAFGTRIYVGYVSGVIQIVD
   WD 8  500-536    -GN----LVAGWVA-------------------HS-------------SPVLKM--AVGADYVYSLASHGGIRGWN

   WD40 Template    TGE----CLRTLSG-------------------HT-------------SGVTSVSFSPDGKRLVSGSEDGTIKVWD
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Last modified: 09 Jan 2019