Input parameters:

  Query = CsaV3_4G001860 (Len=374)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G001860, Len=374):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKANLPVSFAGNGHAQTFNAPDDLPKTVMRTLNQGSNPMSMDFHPIQQTLLLVGTDVGEIGLWEVGSRERLVSKNFKVWH 80  
WD40-rpts                               (_________________WD 1________________)                

Query       81 LNACSMPSQAALVTEPDVSVNRVIWSPDGSLLGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLGFCNPNNQLCVI 160 
WD40-rpts      (____________________WD 2___________________)      (__________________WD 3______

Query      161 TCGDDKTIKVWDAGNGARQYTFAGHEAPVFSVCPYYKENIQYFFSASIDGRVKIWQCDNMRSRVDFEAPGRWCTTMAYSA 240 
WD40-rpts      ___________)   (__________________WD 4_________________)   (__________________WD

Query      241 DGTRIFSCGTSKNGESYIVEWSGGNVQRTYRGFRNRSLGVVQFDTTKNRFLAAGDNFSIKFWDMDNVQLLTTVDADGGLP 320 
WD40-rpts       5_________________)   (_________________WD 6_________________)   (_____________

Query      321 ACPRIRFNKDGTLLAVSGNENGIKILANVDGMRLLRTFDSLSNDLLQHLRLGQS 374 
WD40-rpts      _____WD 7_________________)                           

7 WD40-repeats found in QUERY=CsaV3_4G001860 (Len=374):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    26-64       6.25  372.75  0.00059       30.0%     54.77
  WD 2:  Seg  8    81-125      8.35  459.78  4.0e-05       20.0%     48.73
  WD 3:  Seg 11   132-172      7.74  434.44  8.7e-05       27.5%     52.25
  WD 4:  Seg 15   176-216      8.53  467.22  3.1e-05       32.5%     55.53
  WD 5:  Seg 19   220-260      7.19  411.79  0.00018       17.5%     55.46
  WD 6:  Seg 23   264-303      8.25  455.52  4.5e-05       27.5%     57.16
  WD 7:  Seg 27   307-347      7.74  434.54  8.7e-05       22.5%     60.63

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-64     -KTV-----MRTL--NQG-S-NPMSM--DFHPIQQTL--LLVGTDV--GEIGLWE
   WD 2   81-125    LNACSMPSQAALV--TEPDV-SVNRV--IWSPDGS-L--LGVAYSR--HIVQIYS
   WD 3  132-172    -MRQ-----HLEI--DAHVG-GVNDL--GFCNPNN-QLCVITCGDD--KTIKVWD
   WD 4  176-216    -GAR-----QYTF--AGHEA-PVFSVCPYYKENIQ-Y--FFSASID--GRVKIWQ
   WD 5  220-260    -MRS-----RVDF--EAPGR-WCTTM--AYSADGT-R--IFSCGTSKNGESYIVE
   WD 6  264-303    -GNV-----QRTY--RGFRNRSLGVV--QFDTTKN-R--FLAAGDN--FSIKFWD
   WD 7  307-347    -VQL-----LTTVDADGGLP-ACPRI--RFNKDGT-L--LAVSGNE--NGIKILA

   WD40 Template    TGEC-----LRTL--SGHTS-GVTSV--SFSPDGK-R--LVSGSED--GTIKVWD