WDRR: WD40 Repeat Recognition
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| JobID: PUGWO1659503160 Submitted: 2022-08-03 13:06:00 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79748435 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G015940 (Len=1718) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G015940, Len=1718): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTNMALRKFVCGATPSINLKHSSFPAKVHEQAQFEEPETNQTLESDVEIDPREVYFLIMHFLSSGPCRRTCGLLWDELFE 80
WD40-rpts
Query 81 NQLLPRRYHAWYSRNGMHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLMLNKAPPSRGMSGAIAPNAADVPTL 160
WD40-rpts
Query 161 LGTGTFSLLSYDKHDGVGKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKR 240
WD40-rpts (_____
Query 241 LRGHRNAVYCASFDRMGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGL 320
WD40-rpts ____________WD 1________________) (_________________WD 2________________) (_
Query 321 PISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRLWDARSSSQNAPRIYVPRPLDSVIARNGGSSASTLPQSHQIFCCA 400
WD40-rpts ________________WD 3_________________) (_________________
Query 401 FNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIVKEDNVHKFKNSWF 480
WD40-rpts WD 4________________) (________________WD 5_______________)(_________
Query 481 TYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAI 560
WD40-rpts __WD 6___________) (_________________WD 7________
Query 561 MDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTS 640
WD40-rpts ________) (_________________WD 8_________________) (_________________WD 9___
Query 641 IILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPFGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQ 720
WD40-rpts _____________)(____________________WD10___________________)
Query 721 QRRLGAMGLEWRPSSLKLSTGPDFNLDPDYQLLPLADLDMLIEPLPEIVDAMDWGPENEVQSDDTDSEYNVTEDYSTGGE 800
WD40-rpts (__________________WD11_________________)
Query 801 QRSLNSNCSTDSECSSDDTGIDDGLRRSKRKKQKAYMEVMTSSGRRVKRRNMDEYEGDTVRNSRNRKSKSGHRASKKKSA 880
WD40-rpts
Query 881 SKSLRPQRAAARNARNWISSFKGKCTDGEDEYESGGDCSESESTLEDSDIESDEYERSLQNRNKHSKGKEVFLDEAELIT 960
WD40-rpts
Query 961 KPLDVPESRVDSGNRKKLILKFSLKNPNKVDPPSNTTLTCTNMADVASSSSRSPKEVIETSQNLMRSERQFGNTDGHSDL 1040
WD40-rpts
Query 1041 TEVYTNGNIRWGGSKVRSSKRIRLDAYALSSPFRNGDHNENENTVHEYLERENHFGAPSPHSKIQNYHADETHAVSLTNL 1120
WD40-rpts
Query 1121 KDDDDNASGHSPEMVNGGELKCVSNSKSCDDHDDSNNLNFMFSSDATTSIQYGTPAPEQTENIAPMCTKIRLKSSSLDPE 1200
WD40-rpts
Query 1201 HSLKHKIESLDENSKNDEYYTVSGSPRRLNGLQDTVMNEAFSDLRNDCPQDMDTAMDEKPISTLCSSSELQAVETNKMYT 1280
WD40-rpts
Query 1281 AVYRRSKSNKGKSNIESNGCDSGEHALGNISLSAEANNHKSMLRKTRSLRFKDSYDPNNVCDDLKSDEDQELEQKSRRSG 1360
WD40-rpts
Query 1361 NSPANRSHIPSEEWGSSSRMTVGSRSTRNRRGSLTQDLNPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQ 1440
WD40-rpts
Query 1441 GHQEYIDHCCANYCHTKDMGPWTATRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPASSVYFQSFKLTLPELTS 1520
WD40-rpts
Query 1521 FPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQPKSSEFPESPWERYTIKYRSDPAEPHLHSPWE 1600
WD40-rpts
Query 1601 LYDIVTQWEQPRIDDENKAKLSTAFDQLMSAPMQGRYGIQDLMLLSRKTQFKNRFPVPLCLEIIQERLQNDYYRNLEALK 1680
WD40-rpts
Query 1681 HDFMVMLSNYESFVAKNEDMSKKIRRLSDWFNRNISTL 1718
WD40-rpts
 11 WD40-repeats found in QUERY=CmaCh14G015940 (Len=1718): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 6 235-273 9.16 492.90 1.4e-05 30.0% 55.07 WD 2: Seg 10 277-315 9.05 488.43 1.6e-05 30.0% 55.16 WD 3: Seg 14 319-358 8.99 485.98 1.8e-05 45.0% 55.64 WD 4: Seg 18 383-421 7.94 442.70 6.7e-05 22.5% 54.63 WD 5: Seg 22 434-470 4.83 314.10 0.00364 25.0% 23.66 WD 6: Seg 24 471-498 3.29 250.70 0.02575 17.5% 26.36 WD 7: Seg 27 531-569 6.24 372.28 0.00060 22.5% 54.14 WD 8: Seg 31 573-612 7.78 436.03 8.3e-05 32.5% 57.53 WD 9: Seg 35 616-654 6.36 377.42 0.00051 17.5% 49.10 WD10: Seg 39 655-699 4.59 304.19 0.00494 12.5% 37.39 WD11: Seg 46 754-794 4.30 292.28 0.00715 10.0% 34.56Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 235-273 -MQNI-KRLRGHRN-----AVYCASFDRMGR-YV-ITGSDDRLVKIWS WD 2 277-315 -AYCL-ASCRGHEG-----DITDLAVSSNNA-VV-ASSSNDFVIRVWR WD 3 319-358 -GLPI-SVLRGHTG-----AVTAIAFSPRAAYQL-LSSSDDGTCRLWD WD 4 383-421 -GGSS-ASTLPQSH-----QIFCCAFNACGT-IF-VTGSSDTLARVWS WD 5 434-470 -NHEI-DVLAGHEN-----DVNYVQFSGCA---V-ASRFTTTDIVKED WD 6 471-498 -----------NVH-----KFKNSWFTYDN---I-VTCSRDGSAIIWV WD 7 531-569 -GGPR-QRILPTPR-----GVNMIIWSLDNR-FV-LAAIMDCRICVWN WD 8 573-612 -GSLV-HSLTGHTE-----STYVLDVHPFNP-RIAMSAGYDGKTIVWD WD 9 616-654 -GTPI-RIYEISHF-----KLVDGKFSSDGT-SI-ILSDDVGQLYILS WD10 655-699 TGQGE-SQQDAKYDQFFLGDYRPLIQDPFGN-VV-DQETQLSTYRRNL WD11 754-794 PLADLDMLIEPLPE-----IVDAMDWGPENE-VQ-SDDTDSEYNVTED WD40 Template TGECL-RTLSGHTS-----GVTSVSFSPDGK-RL-VSGSEDGTIKVWD |
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