WDRR: WD40 Repeat Recognition
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| JobID: PQOP31659499837 Submitted: 2022-08-03 12:10:37 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79752760 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh11G006870 (Len=713) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh11G006870, Len=713): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVRSIKNLKKVKRKSKGSRNGAGASSSSVPSMPAKVWQPGVDKLDEGEELQCDPSAYNSLHAFHIGWPCLSFDIVRDSLG 80
WD40-rpts
Query 81 LVRTEFPHTVYLVAGTQAEKASWNSIGIFKISNVSGKRRELLPNKPETDDADMDSDSSDNDEDSEDEEDGGSKAPILQLR 160
WD40-rpts (______________________WD 1______________________)(_____________
Query 161 KVAHEGCINRIRAMQQNSHICASWSDSGHVQIWDFSSHLNTLAESEAEVSQGESSVFNQAPLMKFKHKDEGYAIDWSPLV 240
WD40-rpts ________WD 2_____________________) (_______________WD
Query 241 PGRLLSGDCKNFIHLWEPSSGTSWNVDAAPFVGHSASVEDLQWSPTEPHVFASSSVDGNIAIWDVRSGKSPAAYFKAHNA 320
WD40-rpts 3_______________) (_________________WD 4_________________) (___________
Query 321 DVNVISWNRLASCMLASGCDDGTFSIRDLRLLKEDDSVVAHFEYHKHPITSIEWSPHEASTLAVSSSDNQLTIWDLSLEK 400
WD40-rpts ______WD 5_________________) (_________________WD 6_________________)
Query 401 DEEEEAEFKAKTKEQVNAPEDLPPQLLFVHQGQKDLKELHWHAQIPGMVVSTAADGFNILMPSNIQTTLPSDSISSSSHS 480
WD40-rpts (_______________
Query 481 SSDCEEWRAIYIYGGSTQEKYWEDHPGNSQIRGNMATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDL 560
WD40-rpts __WD 7________________)
Query 561 TFPASSKQLINRIKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRTVDDRLVMVVL 640
WD40-rpts
Query 641 TLITVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGGRGVIKMPLKHAASASFSLS 713
WD40-rpts
 7 WD40-repeats found in QUERY=CmaCh11G006870 (Len=713): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 97-146 6.00 362.68 0.00081 20.0% 1.43 WD 2: Seg 5 147-194 5.43 338.88 0.00169 15.0% 57.21 WD 3: Seg 9 222-257 5.97 361.12 0.00085 22.5% 47.43 WD 4: Seg 12 265-304 7.30 416.30 0.00015 30.0% 46.95 WD 5: Seg 15 309-348 6.96 402.04 0.00024 25.0% 51.74 WD 6: Seg 19 356-395 7.51 424.71 0.00012 25.0% 52.60 WD 7: Seg 28 465-503 7.03 405.21 0.00022 12.5% 26.36Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 97-146 QAEKASWNSIGIFKISNVSGKRRELLPNKPET-DDA-DMDSDSSDNDEDSED WD 2 147-194 EED---GGSKAPILQLRKVAHEGCINRIRAMQQNSH-ICASWSDSGHVQIWD WD 3 222-257 ---------------LMKFKHKDEGYAIDWSPLVPG-RLLSGDCKNFIHLWE WD 4 265-304 -NV----------DAAPFVGHSASVEDLQWSPTEPH-VFASSSVDGNIAIWD WD 5 309-348 -KS----------PAAYFKAHNADVNVISWNR-LASCMLASGCDDGTFSIRD WD 6 356-395 -DS----------VVAHFEYHKHPITSIEWSPHEAS-TLAVSSSDNQLTIWD WD 7 465-503 -IQ----------TTLPSDSISSSSHSSSDCE-EWR-AIYIYGGSTQEKYWE WD40 Template TGE----------CLRTLSGHTSGVTSVSFSP-DGK-RLVSGSEDGTIKVWD |
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