Input parameters:

  Query = CmaCh04G014600 (Len=591)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G014600, Len=591):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPAPAAMRFPTRNIKEFDTDRVTSSPSVAAFQLRGSVPIKIPSRNPLQGDFPEVIEEFLEHGVMKCIAFNRRGTLLAAG 80  
WD40-rpts             (_________________WD 1________________)     (_________________WD 2_______

Query       81 CSDGNCVIWDFETRGIAKELKDKDCVSAITSVCWSKYGHQILVSAADRSLTLWNVLKGEKVNRITLQQTPLQARLHPGSS 160 
WD40-rpts      _________)   (__________________WD 3_________________)   (__________________WD 4

Query      161 NPSLCLACPLSSAPMIVDLKTGSTTLLPVCISDADTASSRGKVSDGTPPFTPTAACFNKYGDLVYVGNSKGEILVIDYER 240 
WD40-rpts      _________________)                    (_________________WD 5________________)(__

Query      241 VQIEAMVPISGGAVVKNIVFSRNGQYLLTNSNDRTIRIYESLLPNKDGLKVIDEITKEFDGLDGAEKLKAVGTKCLTLFR 320 
WD40-rpts      _________________WD 6__________________)                              (_________

Query      321 EFQDSITRMHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGYLVKILEGPKEALIDLGWHPVHPIVVSVSLTGLIYIWA 400 
WD40-rpts      _____________WD 7_____________________)  (_________________WD 8________________)

Query      401 KDYTENWSAFAPDFKELEENEEYVEREDEFDLNPETEKVKEPDVNEDEEVDIVNVEKDSAFSDSDASQDELCFLPAIPCP 480 
WD40-rpts                                          (_________________WD 9________________) (___

Query      481 DIIEQQDKCIEISSKMIENNNSGSPPSEEAGVNGRTTNHASSPLEVLDNPDDAGGARVKRKRKPSEKGLELQAEKGKKPS 560 
WD40-rpts      ______________WD10________________)                                             

Query      561 KPSGRLSKFKTKSMVHQDNSNGTYGDDNSDE 591 
WD40-rpts                                     

10 WD40-repeats found in QUERY=CmaCh04G014600 (Len=591):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-46       4.67  307.69  0.00443       15.0%     14.56
  WD 2:  Seg  3    52-90       7.69  432.28  9.3e-05       20.0%     53.03
  WD 3:  Seg  7    94-134      7.87  439.55  7.4e-05       22.5%     58.42
  WD 4:  Seg 11   138-178      6.32  375.78  0.00054       10.0%     50.29
  WD 5:  Seg 16   199-237      7.12  408.77  0.00019       20.0%     42.62
  WD 6:  Seg 19   238-280      7.78  436.22  8.2e-05       22.5%     58.31
  WD 7:  Seg 25   311-359      6.09  366.43  0.00072       35.0%     49.93
  WD 8:  Seg 29   362-400      8.99  486.16  1.7e-05       25.0%     57.73
  WD 9:  Seg 36   437-475      3.46  257.71  0.02076       10.0%     28.66
  WD10:  Seg 39   477-515      3.88  274.95  0.01221        7.5%     -7.41

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-46     MR-F---PTRNIKEF--DTDRV-----T--SSPSVAA-FQLRGSV---PIKIPSRN
   WD 2   52-90     -F-P---EVIEEFLE--HGVMK-----C--IAFNRRGTLLAAGCS---DGNCVIWD
   WD 3   94-134    -R-G---IAKELKDKDCVSAIT-----S--VCWSKYGHQILVSAA---DRSLTLWN
   WD 4  138-178    -G-E---KVNRITLQ--QTPLQ-----ARLHPGSSNPSLCLACPL---SSAPMIVD
   WD 5  199-237    -S-R---GKVSDGTP--PFTPT-----A--ACFNKYGDLVYVGNS---KGEILVID
   WD 6  238-280    YE-RVQIEAMVPISG--GAVVK-----N--IVFSRNGQYLLTNSN---DRTIRIYE
   WD 7  311-359    VGTK---CLTLFREF--QDSITRMHWKA--PCFSGDGEWVVGGSASKGEHKIYIWD
   WD 8  362-400    -G-Y---LVKILEGP--KEALI-----D--LGWHPVHPIVVSVSL---TGLIYIWA
   WD 9  437-475    -E-K---VKEPDVNE--DEEVD-----I--VNVEKDSAFSDSDAS---QDELCFLP
   WD10  477-515    -I-P---CPDIIEQQ--DKCIE-----I--SSKMIENNNSGSPPS---EEAGVNGR

   WD40 Template    TG-E---CLRTLSGH--TSGVT-----S--VSFSPDGKRLVSGSE---DGTIKVWD