WDRR: WD40 Repeat Recognition
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| JobID: PP3JJ1659461828 Submitted: 2022-08-03 01:37:08 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79788001 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh05G006960 (Len=737) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh05G006960, Len=737): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVAAFSTRAQALKPTPTTAPLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTRRRHLGNVVSPSCVLPLTEEN 80
WD40-rpts
Query 81 VEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHD 160
WD40-rpts
Query 161 NVEKPHPLTFSSSARAATGLRDKRRRASPSDGSVPRTVQSLSLGDSLATDELPRAAAAAAVKMAKNKTLAPPKGAKKGKN 240
WD40-rpts
Query 241 FPLSKDPFFSSEPRKRRKIVDDEIESGESDEDNGFVSAEDVEFEEETADEKRKRVASEYLEKIREIARREKEREDKEKDE 320
WD40-rpts (_
Query 321 DESGDEGEKDSLVAQILQQEQLEDSGRVRREIASRVQNPVASDEFQLLVKHRQSVTAVALSEDDSKGFSSSKDGTILRWD 400
WD40-rpts ________________WD 1_________________) (_________________WD 2________________)
Query 401 VDSGKGEKYQWPSDEALRLHGAKDPQGRATRHSKVTLSLAVSSDGRYLASGGLDRHVHIWDIRTREHIQAFPGHRGPVSC 480
WD40-rpts (_________________WD 3________________) (_______________
Query 481 LTFRQGTSELFSGSYDRTVKIWNVEDRAYINTLFGHQSEVLTIDCLRKERLLTVGRDRSMQLWKVPEESRLVFRAPASSL 560
WD40-rpts __WD 4________________) (________________WD 5________________) (_____________
Query 561 ECCCFISNDEFLSGSSNGSIELWTALKKKPVYIVRNAHPSSLSCSNLELKENGAIPNGCMGNGDVNHNTSPSSSAHSWVS 640
WD40-rpts ___WD 6________________)(___________________WD 7__________________)(____________
Query 641 SVSVCRNSDLTASGAGNGSVRLWALTSDKKDVRPLYDLPLVGFVNSLTFAKSGRFVVAGVGQIIVSQLSSPLEPRLGRWG 720
WD40-rpts ____WD 8_______________)(____________________WD 9___________________)
Query 721 RIPAARNGVAVHPLKLS 737
WD40-rpts
 9 WD40-repeats found in QUERY=CmaCh05G006960 (Len=737): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 6 319-358 4.18 287.32 0.00833 15.0% 20.69 WD 2: Seg 8 362-400 9.02 487.45 1.7e-05 37.5% 53.31 WD 3: Seg 12 423-461 9.04 487.95 1.6e-05 27.5% 45.93 WD 4: Seg 15 465-503 9.94 525.21 5.2e-06 32.5% 55.86 WD 5: Seg 19 507-544 7.77 435.70 8.4e-05 25.0% 52.66 WD 6: Seg 23 547-584 7.10 407.98 0.00020 22.5% 52.30 WD 7: Seg 27 585-627 3.65 265.26 0.01646 10.0% 23.87 WD 8: Seg 29 628-664 8.50 465.95 3.3e-05 25.0% 44.25 WD 9: Seg 32 665-709 6.95 401.87 0.00024 15.0% 48.98Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 319-358 -DE---DESGDE-----GEKDSLVAQILQQE-QLEDSGRVRREIASRVQN WD 2 362-400 -SD---EFQLLV-----KHRQSVTAVALSEDDSKGFSSSKDGTI--LRWD WD 3 423-461 -KD---PQGRAT-----RHSKVTLSLAVSSDGRYLASGGLDRHV--HIWD WD 4 465-503 -RE---HIQAFP-----GHRGPVSCLTFRQGTSELFSGSYDRTV--KIWN WD 5 507-544 -RA---YINTLF-----GHQSEVLTIDCLRKE-RLLTVGRDRSM--QLWK WD 6 547-584 -EE---SRLVFR-----APASSLECCCFISNDE-FLSGSSNGSI--ELWT WD 7 585-627 ALKKKPVYIVRN-----AHPSSLSCSNLELKENGAIPNGCMGNG--DVNH WD 8 628-664 ------NTSPSS-----SAHSWVSSVSVCRNSDLTASGAGNGSV--RLWA WD 9 665-709 LTS---DKKDVRPLYDLPLVGFVNSLTFAKSGRFVVAGVGQIIV--SQLS WD40 Template TGE---CLRTLS-----GHTSGVTSVSFSPDGKRLVSGSEDGTI--KVWD |
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