Input parameters:

  Query = 2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2AQ5_A_PDBID_CHAIN_SEQUENCE, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80  
WD40-rpts                        (____________________WD 1___________________)(________________

Query       81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 
WD40-rpts      _____WD 2____________________)          (_________________WD 3_________________)

Query      161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 
WD40-rpts         (__________________WD 4_________________)   (___________________WD 5_________

Query      241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 
WD40-rpts      __________)(____________________WD 6___________________)(____________________WD 

Query      321 YMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPK 400 
WD40-rpts      7____________________)   (_________________WD 8________________)                

Query      401 SRANDCONVERTINTSYSFNSQLVARBASETOSTRHASHBYTESMD 446 
WD40-rpts                                                    

8 WD40-repeats found in QUERY=2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-63       3.40  254.98  0.02257       17.5%     47.79
  WD 2:  Seg  6    64-110      8.07  447.90  5.7e-05       35.0%     50.79
  WD 3:  Seg 10   121-160      7.58  427.73  0.00011       40.0%     54.14
  WD 4:  Seg 14   164-204      7.88  440.14  7.3e-05       27.5%     56.15
  WD 5:  Seg 18   208-251      5.37  336.42  0.00182       25.0%     46.14
  WD 6:  Seg 22   252-296      5.80  354.08  0.00105       30.0%     45.92
  WD 7:  Seg 26   297-342      3.42  255.99  0.02189       10.0%     44.28
  WD 8:  Seg 29   346-384      3.03  239.87  0.03584        7.5%     19.25

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-63     AKA------DQCYEDVRVS----QTTWDSGFCA--VNP-KFMA-LICEA---SG-GGAFLVLP
   WD 2   64-110    LGKTGRVDKNV----PLVC----GHTAPVLDIA--WCPHNDNV-I-ASG---SE-DCTVMVWE
   WD 3  121-160    -RE------PV----ITLE----GHTKRVGIVA--WHP-TAQNVL-LSA---GC-DNVILVWD
   WD 4  164-204    -GA------AV----LTLG--PDVHPDTIYSVD--WSR-DGAL-I-CTS---CR-DKRVRVIE
   WD 5  208-251    -GT------VV----AEKD----RPHEGTRPVHAVFVS-EGKI-L-TTGFSRMS-ERQVALWD
   WD 6  252-296    TKH------LE----EPLSLQELDTSSGVLLPF--FDP-DTNI-VYLCG---KG-DSSIRYFE
   WD 7  297-342    ITS-EAPFLHY----LSMF----SSKESQRGMG--YMP-KRGL-E-VNK---CEIARFYKLHE
   WD 8  346-384    -EP------IA----MTVP----RKSDLFQEDL--YPP-TAGP-D-PAL---TA-EEWLGGRD

   WD40 Template    TGE------CL----RTLS----GHTSGVTSVS--FSP-DGKR-L-VSG---SE-DGTIKVWD