Input parameters:

  Query = sp_Q54NI1_APC4_DICDI (Len=837)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q54NI1_APC4_DICDI, Len=837):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKDFVLLNDKILPNDVKCYSCCTTMDLIALVTKDDQIVIHRFLTWQKLFTINHMSTTINDNNTNNNNNNNNNNNNNNNDN 80  
WD40-rpts                                                         (____________________________

Query       81 NNDNDKSNKSIVSIQWSPNGKMISIGCEDGSIFIYNIENAKLINKSHNHKHPIHKLAWIKEVSQQRSQQQQQQQQQQQQQ 160 
WD40-rpts      __WD 1_____________________________)                                            

Query      161 QQQQQQQQQQQQQQQQQQQQQQQQQNKNGSTKCNNNYVSPPLFLSQIKQNMNLFPSISYYFENSKEENIYLGGDIYDRPF 240 
WD40-rpts                                                                                      

Query      241 DILICCDSIGVISLLAFGLFKIVTIDLLSLLKQKYSNTHFLIKPSKSLKILDITLTESLNKLSVMIETDNGLFLSVTIDT 320 
WD40-rpts                                                                                      

Query      321 SILLEKRNEIHEISLQYFLLFQLQQSLDIHIKEITEKWKETQQQLSTKWVEFEKVLSDYGFSSSIEQELIDLLMCGVPSP 400 
WD40-rpts                                                                                      

Query      401 PTNQFIVNNINIKKLKLTESNCNSIREILIKYILPSFLNIFHIITVLHNNSLENDGYKGLLDTNTVKNILDYCGSFGMRL 480 
WD40-rpts                                                                                      

Query      481 QSLETLICGIESHYTSFFSWLYKVQCTLNEIQPDRKLSLPFNELSIMSLLKKGLKFDLLFSTSTLFSSSSSSSPSSPPSN 560 
WD40-rpts                                                                                      

Query      561 NNSPTFSSSSSINNNNNNNNNELNQSGNIGFSNNNENLEFQYKDLKGNFHDLFKDFSSKIFETFNEITIVLPSLFKFENV 640 
WD40-rpts                                                                                      

Query      641 IPFCLYDKNDTSVSHKFNCSLISHPNDTIYLSIYTTLSNSNRLFICKREDKLNWSFTCYQLNEKYSILDCKFYNNSSLMA 720 
WD40-rpts                                                                                      

Query      721 LVSEDIIKANQKKSTRKNTYLKQYQYKTDDNDDSDNREYIKLDVNIPQSTILLDLLDSFKSREIILKSRISPITFELSTS 800 
WD40-rpts                                                                                      

Query      801 RKISATFIGKRRVALYDLAEDEEEEEEGEEEDICLVR 837 
WD40-rpts                                           

1 WD40-repeats found in QUERY=sp_Q54NI1_APC4_DICDI (Len=837):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    52-116      3.92  276.45  0.01165       27.5%     45.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-116    NHMSTTINDNNTNNNNNNNNNNNNNNNDNNNDNDKSNKSIVSIQWSPNGKMISIGCEDGSIFIYN

   WD40 Template    TGECLRTLSGHTSG-------------------------VTSVSFSPDGKRLVSGSEDGTIKVWD