WDRR: WD40 Repeat Recognition
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| JobID: P9X6J1659497847 Submitted: 2022-08-03 11:37:27 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79754557 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh10G005910 (Len=662) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh10G005910, Len=662): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRDKQPDSAIIYIFLISLDAYIYDYLMKRKLYASARSFLDEGKLFVDPVAFDAPGGFLLEWWSVFWDIFIARINPQHSEA 80
WD40-rpts
Query 81 AASYIKSQLTKEGDLQLQQQYHLQNSQQSTSTANRLVMNNSFNIQNPSVANKMASKMSVENSSTLPIERDALANVLPKKR 160
WD40-rpts
Query 161 FLKHVSQPPASMFGTAALNAQPLSQSRTAGDNSNSIDTQYHSQQLPGSKNLKGEMKSIMNSRVGMTEGIAESNQGTSRLP 240
WD40-rpts (_________________WD 1________________)
Query 241 LKGWPSTGLDPLSLGHLQQPKSFIQLPHTSNRFQLEHPLMFQAPQSLEGVPSANVACIRPGVPLSQNLNTGKDSQLCFIG 320
WD40-rpts
Query 321 VSDGDSLAPDCHPVLPHADMDCLMDDGPSDYVESFLSPMVSDERDNAGPALKEIRAVSASTSKVECCCFSSDGKLLASGG 400
WD40-rpts (____________________WD 2____________________) (_________________WD 3________
Query 401 HDKKATVWCTKSFKVRSTLDEHSQWITDVCFSPRTLKIATSSSDGTVKVWDVDNHGQSLRTFTGHSTGVTSLDFHPSKHD 480
WD40-rpts ________) (_________________WD 4________________) (_________________WD 5___
Query 481 LICSSDISSEIRYWSVKSGSCVGIFKGGATKLRFQPNNGRMLAAAMGNVVSIIDIETQVCRLKLQGHKNQIHSLCWDPSG 560
WD40-rpts ______________) (_______________WD 6_______________) (________________WD 7__
Query 561 EYLASTSDDQTKVWKFGSGSKGDCIHELNCNGNSFYACVFHPTDTSLLIIGSHESLKLWDMTENKTRTTLRAHDKLVSAL 640
WD40-rpts ______________) (_________________WD 8________________) (________________
Query 641 AASNVSGLVASASHDNCVKLWQ 662
WD40-rpts _WD 9________________)
 9 WD40-repeats found in QUERY=CmaCh10G005910 (Len=662): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 162-200 5.71 350.50 0.00118 10.0% -6.33 WD 2: Seg 4 321-366 4.36 294.77 0.00662 7.5% 10.90 WD 3: Seg 6 371-409 9.02 487.40 1.7e-05 40.0% 55.47 WD 4: Seg 10 413-451 10.56 550.90 2.3e-06 40.0% 55.22 WD 5: Seg 14 456-495 9.06 488.77 1.6e-05 40.0% 52.62 WD 6: Seg 18 499-534 7.47 423.07 0.00012 20.0% 51.88 WD 7: Seg 22 538-575 8.42 462.27 3.7e-05 37.5% 53.04 WD 8: Seg 26 582-620 8.96 484.69 1.8e-05 22.5% 56.13 WD 9: Seg 30 624-662 8.98 485.80 1.8e-05 25.0% 52.63Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 162-200 -LK------HVSQPPASMFGTAALNAQPLSQSR-TAGDNSNSIDTQY WD 2 321-366 VSDGDSLAPDCHPVLPHADMDCLMDDGPSDYVE-SFLSPMVSDERDN WD 3 371-409 -LK------EIRAVSASTSKVECCCFSSDGKLL-ASGGHDKKATVWC WD 4 413-451 -FK------VRSTLDEHSQWITDVCFSPRTLKI-ATSSSDGTVKVWD WD 5 456-495 -GQ------SLRTFTGHSTGVTSLDFHPSKHDLICSSDISSEIRYWS WD 6 499-534 -GS------CVGIFKGG---ATKLRFQPNNGRM-LAAAMGNVVSIID WD 7 538-575 -QV------CRLKLQGHKNQIHSLCWDPSGEYL-ASTSDDQT-KVWK WD 8 582-620 -GD------CIHELNCNGNSFYACVFHPTDTSL-LIIGSHESLKLWD WD 9 624-662 -NK------TRTTLRAHDKLVSALAASNVSGLV-ASASHDNCVKLWQ WD40 Template TGE------CLRTLSGHTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD |
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