WDRR: WD40 Repeat Recognition
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| JobID: P8C9M1659514141 Submitted: 2022-08-03 16:09:01 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79737974 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_2G015140 (Len=1219) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_2G015140, Len=1219): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
WD40-rpts (_______________WD 1______________) (_________________WD 2________________)
Query 81 KTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 161 VWDIGALRKKTVSPADDILRLSQMNADLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
WD40-rpts __) (_______________________WD 5_______________________)(_______
Query 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGLQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLER 320
WD40-rpts ____________WD 6___________________) (________________WD 7________________)
Query 321 ERPAFAISGDSLFYVKDRFLRYYEFSTQKDTQVVPIRRPGSTSLNQSPRTLSFSPTENTILVCSDLDGGCYEFYTIPKDS 400
WD40-rpts
Query 401 FGRSDSLQDAKRGLGGSAVFVARNRFAVLDKSHNQVLLKNLKNEIVKKVPIPITADAIFYAGTGNLLCRAEDRVVIYDLQ 480
WD40-rpts (_
Query 481 QRIILGDLQTPFVKYVVWSNDMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDS 560
WD40-rpts ________________WD 8_________________)
Query 561 GIIRTLDVPIYITKVSGNTLFCLDRDGTVRSLIIDATEYIFKLSLLKKRFDHVMSMIRNSQLCGQAMIAYLQQKGFPEVA 640
WD40-rpts
Query 641 LHFVKDERTRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLITGNTAKLSK 720
WD40-rpts
Query 721 MLKIAEVKNDVMGQFHNALYLGDVRERVKILENVGHLPLAYITASTHGLHDVAERLAAELGDDIPSLPEGKTASLLLPPI 800
WD40-rpts
Query 801 PVMCGGDWPLLRVMKGIFEGGLDNVGAGRADEDDDEVADGDWGEELDVVDVDGLQNGDVAAILDDVEGAEENEEEGGWDL 880
WD40-rpts
Query 881 EDLELPPEADTPKVSVTSRNSVFVAPTPGLPANLVWTQRSSLAAEHAAAGNFDTAMRLLNRQLGIKNFAPLRPIFLDLHA 960
WD40-rpts
Query 961 GSQTYLRAFSSAPIISLAVERGFSESSNANAKGSPALIYSFSQLEEKLKAGYKATTTGKFSDALRLFLSILHTIPLIVVE 1040
WD40-rpts
Query 1041 SRREVDEVKELIIIVKEYVLGLQMELKRRELKNNPVRQMELAAYFTHCNLQLPHLRLALLNAMTVCYKAKNLASAANFAR 1120
WD40-rpts
Query 1121 RLLETNPSIENQAKTARQVLQAAERNMTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPSQEGQLCSVCD 1200
WD40-rpts
Query 1201 LAVVGADASGLLCSPTQNR 1219
WD40-rpts
 8 WD40-repeats found in QUERY=CsaV3_2G015140 (Len=1219): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-37 4.57 303.30 0.00508 20.0% 49.02 WD 2: Seg 4 41-79 7.41 420.81 0.00013 32.5% 57.11 WD 3: Seg 8 83-121 8.49 465.27 3.3e-05 37.5% 56.75 WD 4: Seg 12 125-163 8.95 484.57 1.8e-05 40.0% 56.17 WD 5: Seg 17 181-232 7.59 428.25 0.00011 32.5% 55.59 WD 6: Seg 21 233-276 8.35 459.49 4.0e-05 37.5% 55.29 WD 7: Seg 25 280-317 3.30 250.86 0.02562 17.5% 55.41 WD 8: Seg 43 479-518 3.48 258.53 0.02025 17.5% 44.12Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-37 T---------------------KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWD WD 2 41-79 -GT------------L----IDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWN WD 3 83-121 -HR------------C----LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN WD 4 125-163 -RT------------C----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD WD 5 181-232 LSQMNADLFGGVDAVV----KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR WD 6 233-276 MND------------TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWD WD 7 280-317 -RT------------G----LQTFRREHDRFWILAAHPEMNLLAAGH-DSGMIVFK WD 8 479-518 LQQ------------R----IILGDLQTPFVKYVVWSNDMESVALLSKHAIIIANK WD40 Template TGE------------C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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