Input parameters:

  Query = CmaCh12G005990 (Len=486)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh12G005990, Len=486):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWKDIRDREAGKLRPNSFANRVKSDRVSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRASHSE 80  
WD40-rpts                                      (_________________WD 1_________________)        

Query       81 GLIAKYQCLFAVDKQHEHGHKYAISSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHML 160 
WD40-rpts                (_________________WD 2_________________)(___________________WD 3______

Query      161 IAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPI 240 
WD40-rpts      _____________)   (_________________WD 4_________________)                       

Query      241 SGWTANKVPLLPSLAITLSTSKSHLASQGSNMKSRILHKKLATNGNATKPSSTTGKLPAKGSTRQRLHPGLLSSQDRAVS 320 
WD40-rpts                                      (_________________WD 5________________)(________

Query      321 HYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETVRLHTNKPLQLATSQDSALVFAPCMANIKAFDMWTGK 400 
WD40-rpts      _________WD 6________________)       (________________WD 7________________)   (_

Query      401 ASLTLSGHYEAVNCCLYSFQDQELYTGGNDRQILVWSPSRDSTELWTRRIGNPVQTKITGATDCPLPQGRSVSTLMPSIK 480 
WD40-rpts      ________________WD 8________________)   (___________________WD 9________________

Query      481 LCPPCT 486 
WD40-rpts      __)   

9 WD40-repeats found in QUERY=CmaCh12G005990 (Len=486):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    33-72       7.96  443.48  6.6e-05       27.5%     55.77
  WD 2:  Seg  7    91-130      7.77  435.68  8.4e-05       32.5%     43.05
  WD 3:  Seg 10   131-174      7.90  440.84  7.1e-05       20.0%     55.12
  WD 4:  Seg 14   178-217      9.02  487.33  1.7e-05       45.0%     58.09
  WD 5:  Seg 21   273-311      6.81  395.82  0.00029       20.0%     33.82
  WD 6:  Seg 25   312-350      8.80  478.23  2.2e-05       27.5%     47.53
  WD 7:  Seg 29   358-395      6.09  366.13  0.00072       20.0%     47.81
  WD 8:  Seg 33   399-437      9.59  510.79  8.1e-06       35.0%     56.76
  WD 9:  Seg 37   441-483      3.40  254.92  0.02262       12.5%     24.44

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-72     -SN----HKDIVSPHRGSV------NSLQVDLT-EGR-YLLSGASDASAAVFD
   WD 2   91-130    -AV----DKQHEHGHKYAI------SSAIWY-PIDTG-LFVTGSYDHHINVWD
   WD 3  131-174    TNTTQVVVNFKLPGKVYRT------AMSSLA-T-SHM-LIAAGTEDVQVRLCD
   WD 4  178-217    -GA----FSHTLSGHRDGV------MSVEWS-A-SSEWVLITGGCDGAIRFWD
   WD 5  273-311    KSR----ILH-KKLATNGN------ATKPSS-T-TGK-LPAKGSTRQRLHPGL
   WD 6  312-350    -LS----SQDRAVSHYGAV------TGLKVT-G-DGM-YLLSAGSDSRLKLWD
   WD 7  358-395    -LV----NYETVRLHTNKP------LQLATS-Q-DSA-LVFAPC-MANIKAFD
   WD 8  399-437    -GK----ASLTLSGHYEAV------NCCLYS-F-QDQ-ELYTGGNDRQILVWS
   WD 9  441-483    -DS----TELWTRRIGNPVQTKITGATDCPL-P-QGR-SVSTLMPS--IKLCP

   WD40 Template    TGE----CLRTLSGHTSGV------TSVSFS-P-DGK-RLVSGSEDGTIKVWD